Table 2.
Statistics of the two newly assembled hydrangea genomes and the previously published genome.
| H. macrophylla cv. Aogashima-1 | H. macrophylla cv. Veitchii | H. macrophylla cv. Endless Summer | ||
|---|---|---|---|---|
| Reference | [18] | This study | This study | |
| Platform | PacBio SeqII CLR | PacBio SeqII CLR | PacBio SeqII CCS/HiFi | |
| Assembly size, Gb | 2.23 | 2.21 | 2.22 | |
| Number of contigs | 3779 | 6790 | 396 | |
| Contigs N50 (Kbp) | 39.4 | 706.955 | 22 839 | |
| Number of scaffolds | 3780 | 1172 | 169 | |
| Scaffolds N50 (Mb) | 1.5 | 122.4 | 119.5 | |
| Number of pseudochromosomes | 18 | 18 | 18 | |
| % of Assembly length in pseudochromosomes | 49.33 | 96.38 | 98.65 | |
| Gap, % | 0.10 | 0.16 | 0.01 | |
| LAI | 17.50 | 21.12 | 21.85 | |
| Number of annotated genes | 34 149 | 42 194 | 50 326 | |
| BUSCO (%) | Complete | 63.1 | 89.8 | 93.0 |
| Single-copy | 60.0 | 83.3 | 87.9 | |
| Duplicated | 3.1 | 6.5 | 5.1 | |
| Fragmented | 2.4 | 2.2 | 2.2 | |
| Missing | 34.5 | 8.0 | 4.8 | |