Table 2. Variant analysis in the patient.
M1 | M2 | ||
---|---|---|---|
Variants | cDNA mutation* | c.203G>T | c.1128G>A |
Predicted protein changes | p.S68I | p.W376* | |
Validate protein changes | p.D24Vfs*5 | p.W376* | |
Mutation type | Splicing | Nonsense | |
Genotype | Heterozygous | Heterozygous | |
Allele frequency | ExAC Browser | 0 | 0 |
GnomAD | 0 | 0.00000397709 | |
1000 Genomes Project | 0 | 0 | |
Function prediction | dpsi_zscore† | –2.706 | –3.021 |
SpliceAI score‡ | 0.86 | - |
M1 refers to mutation 1; M2 refers to mutation 2.
NCBI reference sequence number of CFAP52 is NM_001080556.2 (https://www.ncbi.nlm.nih.gov/genbank/).
Absolute values of the score >2 are considered to be deleterious.
Scores >0.5 are suggested to affect splicing.