Table 1.
Comparison of reference sequence library features.
| Library Name | Latest Release | Total Entries | Domain Focus | Reviewed Publication | Code | Data DOI |
|---|---|---|---|---|---|---|
| MMETSP3 | 2014 | 678 transcriptomes | Marine microbial eukaryotes | Yes | No | No |
| PhyloDB4 | 2015 | 19,962 viral, 230 archaeal, 4910 bacterial, 894 eukaryotic taxa (409 from MMETSP) | General | No | No | No |
| EukZoo6 | 2018 | 739 genomes, transcriptomes (678 from MMETSP) | Aquatic microbial eukaryotes | No | Yes | Yes |
| METdb7 | 2019 | 464 transcriptomes (410 from MMETSP) | Marine microbial eukaryotes | Poster | Yes | No |
| MMETSP re-assemblies8 | 2019 | 678 MMETSP transcriptomes | Marine microbial eukaryotes | Yes | Yes | Yes17 |
| EukProt9 | 2022 | 993 species (272 from MMETSP) | General eukaryotes | Yes | No | Yes |
| MarFERReT | 2023 | 902 total genomes & transcriptomes (678 from MMETSP), 800 QC-validated entries | Marine microbial eukaryotes | Yes | Yes299 | Yes298 |
Library Name: shorthand name of the database. Latest Release: most recent release of the database or publication. Total Entries: number of included references, broken down by provenance. Domain Focus: taxonomic emphasis of the database. Publication: peer-reviewed publication accompanies the database. Code: availability of an accessible codebase complete with documentation.