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. 2023 Dec 5;28(24):7952. doi: 10.3390/molecules28247952

Table 1.

Common changes observed in A. vinelandii MoFe-protein structures. Cells highlighted in red indicate a deviation from the resting state (MoFeAs-isolated) structure (PDB code 3U7Q). Flip indicates an alternate conformation is observed. N/C stands for no change.

MoFeAs-isolated
PDB: 3U7Q
MoFe∆nifB
PDB: 1L5H
MoFe∆nifV
PDB: 8ENN
MoFeAlkaline-inactivated
PDB: 8ENL
t/oComplex 1
PDB: 7UT8
t/oComplex 2
PDB: 7UT9
MoFeAcidic
PDB: 5VQ4
MoFeCO
PDB: 4TKV
MoFeCO-CO
PDB: 7JRF
MoFeSe
PDB: 5BVG
Cα RMSD with 3U7Q 0.370 0.385 0.387 0.405 0.433 0.257 0.101 0.090 0.077
Asymmetric No No Yes Yes Yes Yes No No No No
Disordered No Yes Yes Yes Yes Yes No No No No
Ordered/Disordered dimer Ord. Dis. Ord. Dis. Ord. Dis. Ord. Dis.
α-Gln191 Reference Flip N/C Flip N/C Flip N/C N/C N/C N/C N/C N/C N/C N/C
α-Trp253 Reference Flip N/C Flip N/C Flip N/C Flip N/C Flip Flip N/C N/C N/C
α-His274 Reference Flip N/C Flip Flip Flip N/C Flip N/C Flip Flip N/C N/C N/C
α-Phe300 Reference Flip N/C Flip Flip Flip N/C Flip N/C Flip Flip N/C N/C N/C
α-His362 Reference Flip N/C N/C N/C Flip N/C N/C N/C N/C Flip N/C N/C N/C
α-His451 Reference Flip N/C Flip Flip Flip N/C Flip N/C Flip N/C N/C N/C N/C
β-Gln93 Reference Flip N/C N/C N/C Flip N/C N/C N/C N/C N/C N/C N/C N/C