Table 2.
Summary of colocalized antimicrobial resistance gene-carrying plasmids from assembled contigs.
| Level of Resistance 1 | AMU | Sample ID | No. of Plasmids with ARGs | No. of MDR 2-Carrying Plasmids |
|---|---|---|---|---|
| Low | CONV | Con-Sum-A-05Sep17-MG44 | 1 | - |
| Con-Sum-A-26Apr17-MG7 | 3 | 1 | ||
| Con-Sum-D-26Jun18-MG19 | 1 | - | ||
| Con-Sum-D-26Jun18-MG20 | 1 | - | ||
| NAT | Nat-Sum-B-26Apr17-MG6 | 2 | - | |
| Nat-Win-B-13Mar18-MG14 | 3 | - | ||
| Nat-Win-C-29Mar17-MG58 | 1 | - | ||
| Nat-Win-C-31Jan17-M7 | 1 | - | ||
| Medium | CONV | Con-Sum-D-1Aug17-MG28 | 2 | - |
| Con-Win-A-11Dec17-MG55 | 1 | - | ||
| Con-Win-A-13Mar18-MG15 | 2 | - | ||
| Con-Win-D-2Feb17-M10 | 3 | - | ||
| NAT | Nat-Sum-B-26Apr17-MG5 | 1 | - | |
| Nat-Sum-C-10Apr18-MG9 | 1 | - | ||
| Nat-Sum-C-26Jun18-MG17 | 1 | - | ||
| Nat-Win-B-25Oct16-M1 | 2 | - | ||
| High | CONV | Con-Win-A-1Mar17-MG3 | 2 | - |
| Con-Sun-A-25Jul18-MG23 | 0 | |||
| Con-Win-D-1Feb17-M9 | 4 | 1 | ||
| Con-Win-D-29Mar17-MG59 | 2 | - | ||
| NAT | Nat-Sum-B-28Jun17-M18 | 2 | - | |
| Nat-Sum-B-29May18-MG45 | 0 | - | ||
| Nat-Sum-C-1Aug17-MG25 | 1 | - | ||
| Nat-Win-C-31Jan17-MG50 | 1 | - |
1 Levels of resistance as TMM-normalized reads: high (>15,000), medium (>5000), and low (<5000). 2 MDR: multi-drug resistance defined at resistance to ≥3 antimicrobial classes.