Fig 3.

Diversity of the high-quality non-redundant bacterial TOPAZ MAGs. The approximately maximum-likelihood phylogenetic tree was inferred from a concatenated protein alignment of 75 proteins using FastTree and GToTree workflow. The MAG names were omitted but the interactive version of the tree containing the MAG names can be accessed through iTOL (https://itol.embl.de/shared/halexand). Branches (nodes) are colored based on taxonomic annotations estimated by GTDBtk. The OR, SF, and D of the co-assembly that a MAG was isolated from is color coded as colored bars. The GC (%) content is shown as a bar graph (in green), the genome size as a bubble plot (the estimated size of the smallest genome included in this tree is 1.00 Mbp and the largest is 13.24 Mbp), and the number of MAGs in each genomic cluster (of 99 or higher %ANI) as a bar plot (in gray).