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Molecular Dynamics simulation of PCV2 Rep. (A) Ribbon cartoon of full-length PCV2 Rep bound to ADP (CPK model) and 20 nt ssDNA. (B) Rep bound to 20 nt ssDNA and (C) Rep. Chains are colored purple (chain A at top), green (chain B), magenta (chain C), cyan (chain D), yellow (chain E), and red (chain F). (D) Time vs. rmsd in bold lines (Rep-(ssDNA + ADP) in black, Rep-ssDNA in red, and Rep in blue); time vs. Rg (radius of gyration) in thin lines and circles (same color as time vs. rmsd).
