Figure 2.

Root mean square fluctuations (rmsf) of PCV2 Rep. (A) Residue vs. rmsf of Rep-(ssDNA + ADP), Rep-ssDNA, and Rep using same colors as Figure 1. The traces are averages of the six chains of Rep calculated from the last 200 nsec of each simulation. Local regions with high rmsf are labeled on top. (B) Licorice model of Rep color coded according to the rmsf values, with high rmsf in red, medium in white, and low in blue. The thickness of licorice is also drawn according to the rmsf values. (C) Ninety-degree rotation of Rep about the y-axis.