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. 2023 Dec 8;15(12):2393. doi: 10.3390/v15122393

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© 2023 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

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Staircase arrangement of the Rep AD. (A) Licorice model of the final frame from the Rep-(ssDNA + ADP) simulation. Rep is shown as licorice with silhouettes and color coded according to Figure 1. A plane is drawn through the centroids of Lys240 from each of the six chains and shown as a gray disk. (B) Symmetrized model of Rep with the plane through the six Lys240, shown as a gray disk. (C) Degree histograms (box scatter plots) representing the angles between the plane calculated for each simulation and a symmetrized Rep. The average and kernel smooth for each histogram are shown as a blue and red lines, respectively. The average and standard deviation values for each histogram are written at the top.