| Bacterial and virus strains |
|
| One Shot Stbl-3 chemically competent E. coli
|
Thermo Fisher Scientific |
Cat# C737303 |
|
| Biological samples |
|
| Leukocyte reduction chamber (LRC) from Trima apheresis collection |
Vitalant Blood Donation, San Francisco |
http://www.vitalant.org/ |
|
| Chemicals, peptides, and recombinant proteins |
|
| Dynabeads human T-activator CD3/CD28 |
Life Technologies |
Cat# 11131D; Lot# 00979236 |
| AMV reverse transcriptase |
Promega |
Cat# M5101 |
| Maxima SYBR Green PCR master mix |
Thermo Scientific |
Cat# K0253 |
| X-tremeGENE 9 DNA transfection reagent |
Roche |
Cat# XTG9-RO |
|
| Critical commercial assays |
|
| Direct-zol RNA MiniPrep Kit |
Zymo Research |
Cat# 2052 |
| NucleoBond Xtra Maxi Kit |
Macherey-Nagel |
Cat# 740414.100 |
| eBioscience Fixable Viability Dye eFluor 780 |
Invitrogen |
Cat# 65-0865-14; Lot# 2062571, 2450571 |
| RosetteSep human CD4+ T cell enrichment cocktail |
STEMCELL Technologies |
Cat# 15062; Lot# 18A86332, 19E101792 |
|
| Experimental models: Cell lines |
|
| HEK293T, human, female, epithelial kidney cells |
ATCC |
CRL-3216 |
|
| Oligonucleotides |
|
| GFP qPCR forward primer: 5′ ATGGTGAGCAAGGGCGAGGAG 3′ |
Drenan et al.2
|
N/A |
| GFP qPCR reverse primer: 5′ GTGGTGCAGATGAACTTCAG 3′ |
Boehm et al.1
|
N/A |
| SMYD5 qPCR forward primer: AATGCACTTTATCGCTACCGAG |
Boehm et al.1
|
PrimerBank ID: 154689857b3; https://pga.mgh.harvard.edu/primerbank/
|
| SMYD5 qPCR reverse primer: CTGCCAACCGACATTCTGC |
Boehm et al.1
|
PrimerBank ID: 154689857b3; https://pga.mgh.harvard.edu/primerbank/
|
| RPL13A qPCR forward primer: GCCCTACGACAAGAAAAAGCG |
Boehm et al.1
|
PrimerBank ID: 14591905c2; https://pga.mgh.harvard.edu/primerbank/
|
| RPL13A qPCR reverse primer: TACTTCCAGCCAACCTCGTGA |
Boehm et al.1
|
PrimerBank ID: 14591905c2; https://pga.mgh.harvard.edu/primerbank/
|
|
| Recombinant DNA |
|
| Lentiviral packaging construct pCMVdelta R8.91 |
Naldini et al.3
|
N/A |
| VSV-G glycoprotein-expressing vector |
Naldini et al.3
|
N/A |
| HIV-1 NL4.3-GFP |
Kutsch et al.4
|
HIV-1 NL4.3-GFP |
| SMYD5 #1 TRC human shRNA |
Thermo Scientific |
TRCN0000155095 |
| SMYD5 #2 TRC human shRNA |
Thermo Scientific |
TRCN0000156306 |
| Non-targeting human shRNA |
Millipore Sigma |
SHC002 |
| pLKO.1 mCherry |
Addgene |
Cat# 128073; RRID: Addgene_120873 |
|
| Software and algorithms |
|
| AlphaView – AlphaImager HP 3.5.0.927 |
ProteinSimple |
https://www.proteinsimple.com/resources |
| FlowJo 9.9–10.8 |
Tree Star |
https://www.flowjo.com/ |
| ImageJ |
NIH |
https://imagej.nih.gov/ij/ |
| Prism8 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
| SDS 2.4 software |
Applied Biosystems |
http://home.appliedbiosystems.com |
| SoftMax Pro 4.7.1–6.5.1 |
Molecular Devices |
https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software#gref |