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. 2023 Nov 9;4(4):102694. doi: 10.1016/j.xpro.2023.102694
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

One Shot Stbl-3 chemically competent E. coli Thermo Fisher Scientific Cat# C737303

Biological samples

Leukocyte reduction chamber (LRC) from Trima apheresis collection Vitalant Blood Donation, San Francisco http://www.vitalant.org/

Chemicals, peptides, and recombinant proteins

Dynabeads human T-activator CD3/CD28 Life Technologies Cat# 11131D; Lot# 00979236
AMV reverse transcriptase Promega Cat# M5101
Maxima SYBR Green PCR master mix Thermo Scientific Cat# K0253
X-tremeGENE 9 DNA transfection reagent Roche Cat# XTG9-RO

Critical commercial assays

Direct-zol RNA MiniPrep Kit Zymo Research Cat# 2052
NucleoBond Xtra Maxi Kit Macherey-Nagel Cat# 740414.100
eBioscience Fixable Viability Dye eFluor 780 Invitrogen Cat# 65-0865-14; Lot# 2062571, 2450571
RosetteSep human CD4+ T cell enrichment cocktail STEMCELL Technologies Cat# 15062; Lot# 18A86332, 19E101792

Experimental models: Cell lines

HEK293T, human, female, epithelial kidney cells ATCC CRL-3216

Oligonucleotides

GFP qPCR forward primer: 5′ ATGGTGAGCAAGGGCGAGGAG 3′ Drenan et al.2 N/A
GFP qPCR reverse primer: 5′ GTGGTGCAGATGAACTTCAG 3′ Boehm et al.1 N/A
SMYD5 qPCR forward primer: AATGCACTTTATCGCTACCGAG Boehm et al.1 PrimerBank ID: 154689857b3; https://pga.mgh.harvard.edu/primerbank/
SMYD5 qPCR reverse primer: CTGCCAACCGACATTCTGC Boehm et al.1 PrimerBank ID: 154689857b3; https://pga.mgh.harvard.edu/primerbank/
RPL13A qPCR forward primer: GCCCTACGACAAGAAAAAGCG Boehm et al.1 PrimerBank ID: 14591905c2; https://pga.mgh.harvard.edu/primerbank/
RPL13A qPCR reverse primer: TACTTCCAGCCAACCTCGTGA Boehm et al.1 PrimerBank ID: 14591905c2; https://pga.mgh.harvard.edu/primerbank/

Recombinant DNA

Lentiviral packaging construct pCMVdelta R8.91 Naldini et al.3 N/A
VSV-G glycoprotein-expressing vector Naldini et al.3 N/A
HIV-1 NL4.3-GFP Kutsch et al.4 HIV-1 NL4.3-GFP
SMYD5 #1 TRC human shRNA Thermo Scientific TRCN0000155095
SMYD5 #2 TRC human shRNA Thermo Scientific TRCN0000156306
Non-targeting human shRNA Millipore Sigma SHC002
pLKO.1 mCherry Addgene Cat# 128073; RRID: Addgene_120873

Software and algorithms

AlphaView – AlphaImager HP 3.5.0.927 ProteinSimple https://www.proteinsimple.com/resources
FlowJo 9.9–10.8 Tree Star https://www.flowjo.com/
ImageJ NIH https://imagej.nih.gov/ij/
Prism8 GraphPad https://www.graphpad.com/scientific-software/prism/
SDS 2.4 software Applied Biosystems http://home.appliedbiosystems.com
SoftMax Pro 4.7.1–6.5.1 Molecular Devices https://www.moleculardevices.com/products/microplate-readers/acquisition-and-analysis-software/softmax-pro-software#gref