Table 2.
Details of the PPV isolates used in this study.
| No. | Isolate | GenBank No. | Collection Date | Country | Dataset |
|---|---|---|---|---|---|
| 1 | NADL-2 | NC_001718 | 1993 | USA | Complete genome |
| 2 | Kresse | U44978 | 1996 | USA | Complete genome |
| 3 | POVCAP | M32787 | 1993 | USA | VP1/2 |
| 4 | POVG | D00623 | 2000 | Spain | NS1 & VP1/2 |
| 5 | 32–96 | AY145472 | 2003 | Brazil | VP2 Partial |
| 6 | 83–95 | AY145473 | 2003 | Brazil | VP2 Partial |
| 7 | 142–95 | AY145474 | 2003 | Brazil | VP2 Partial |
| 8 | 27–00 | AY145477 | 2003 | Brazil | VP2 Partial |
| 9 | 58–00 | AY145478 | 2003 | Brazil | VP2 Partial |
| 10 | 71–00 | AY145479 | 2003 | Brazil | VP2 Partial |
| 11 | 103–95 | AY145480 | 2003 | Brazil | VP2 Partial |
| 12 | 124–95 | AY145481 | 2003 | Brazil | VP2 Partial |
| 13 | 12–97 | AY145482 | 2003 | Brazil | VP2 Partial |
| 14 | 30–95 | AY145483 | 2003 | Brazil | VP2 Partial |
| 15 | 148–95 | AY145484 | 2003 | Brazil | VP2 Partial |
| 16 | 181–95 | AY145485 | 2003 | Brazil | VP2 Partial |
| 17 | 05–95 | AY145488 | 2003 | Brazil | VP2 Partial |
| 18 | 05–96 | AY145489 | 2003 | Brazil | VP2 Partial |
| 19 | 110–95 | AY145490 | 2003 | Brazil | VP2 Partial |
| 20 | 135–95 | AY145491 | 2003 | Brazil | VP2 Partial |
| 21 | 13–97 | AY145492 | 2003 | Brazil | VP2 Partial |
| 22 | 155–95 | AY145493 | 2003 | Brazil | VP2 Partial |
| 23 | 164–95 | AY145494 | 2003 | Brazil | VP2 Partial |
| 24 | 29–97 | AY145496 | 2003 | Brazil | VP2 Partial |
| 25 | 111–00 | AY145499 | 2003 | Brazil | VP2 Partial |
| 26 | 15a | AY684865 | 2006 | Germany | VP1/2 |
| 27 | 21a | AY684868 | 2006 | Germany | VP1/2 |
| 28 | 27a | AY684871 | 2006 | Germany | VP1/2 |
| 29 | 143a | AY684867 | 2006 | Germany | VP1/2 |
| 30 | 106b | AY684870 | 2006 | Germany | VP1/2 |
| 31 | 225b | AY684864 | 2006 | Germany | VP1/2 |
| 32 | IDT | AY684872 | 2006 | Germany | NS1/2/3 & VP1/2 |
| 33 | Tornau | AY684869 | 2006 | Germany | NS1/2/3 & VP1/2 |
| 34 | WB72 | JQ249913 | 2006 | Romania | VP1/2 |
| 35 | WB143 | JQ249914 | 2007 | Romania | VP1/2 |
| 36 | WB533 | JQ249915 | 2010 | Romania | VP1/2 |
| 37 | WB613 | JQ249916 | 2012 | Romania | VP1/2 |
| 38 | WB631 | JQ249917 | 2012 | Romania | VP1/2 |
| 39 | WB639 | JQ249918 | 2012 | Romania | VP1/2 |
| 40 | WB687 | JQ249919 | 2012 | Romania | VP1/2 |
| 41 | WB701 | JQ249920 | 2012 | Romania | VP1/2 |
| 42 | WB716 | JQ249921 | 2012 | Romania | VP1/2 |
| 43 | WB748 | JQ249922 | 2012 | Romania | VP1/2 |
| 44 | WB754 | JQ249923 | 2012 | Romania | VP1/2 |
| 45 | WB773 | JQ249924 | 2012 | Romania | VP1/2 |
| 46 | WB802 | JQ249925 | 2012 | Romania | VP1/2 |
| 47 | WB804 | JQ249926 | 2012 | Romania | VP1/2 |
| 48 | 6R | JQ249927 | 2011 | Romania | VP1/2 |
| 49 | 1h | GQ884035 | 2011 | EU | NS1/2/3 & VP1/2 |
| 50 | 1d | GQ884037 | 2011 | EU | NS1/2/3 & VP1/2 |
| 51 | 3h | GQ884039 | 2011 | EU | NS1/2/3 & VP1/2 |
| 52 | 1f | GQ884040 | 2011 | EU | NS1/2/3 & VP1/2 |
| 53 | 3a | GQ884041 | 2011 | EU | NS1/2/3 & VP1/2 |
| 54 | 2 g | GQ884042 | 2011 | EU | NS1/2/3 & VP1/2 |
| 55 | 6a | GQ884043 | 2011 | EU | NS1/2/3 & VP1/2 |
| 56 | 1g | GQ884044 | 2011 | EU | NS1/2/3 & VP1/2 |
| 57 | 4e | GQ884047 | 2011 | USA | NS1/2/3 & VP1/2 |
| 58 | 7a | JN400516 | 2011 | Germany | NS1/2/3 & VP1/2 |
| 59 | 8a | JN400517 | 2011 | Germany | NS1/2/3 & VP1/2 |
| 60 | 14a | JN400518 | 2011 | Germany | NS1/2/3 & VP1/2 |
| 61 | 693a | JN400519 | 2011 | Australia | NS1/2/3 & VP1/2 |
| 62 | Challenge | AY684866 | 2006 | UK | NS1/2/3 & VP1/2 |
| 63 | 15,425 | JN400520 | 2011 | Switzerland | VP1/2 |
| 64 | VRI-1 | AY390557 | 2003 | South Korea | NS1/2/3 & VP1/2 |
| 65 | T142_Korea | KY994646 | 2017 | South Korea | NS1/2/3 & VP1/2 |
| 66 | HN-Z1 | AY789533 | 2004 | China | NS1 |
| 67 | HN-Z3 | AY789534 | 2004 | China | NS1 |
| 68 | Nanjing-1 | AY739664 | 2004 | China | NS1 |
| 69 | NJ | AY686601 & AY686602 | 2004 | China | NS1 & VP2 |
| 70 | NJ-2 | AY789532 | 2004 | China | NS1 |
| 71 | SD-68 | AY502114 & AY502115 | 2004 | China | NS1 & VP2 |
| 72 | LJL12 | DQ464345 | 2006 | China | VP2 |
| 73 | BQ | EU790641 | 2006 | China | Complete genome |
| 74 | ZJ | EU790642 | 2006 | China | Complete genome |
| 75 | China | AY583318 | 2006 | China | NS1 & VP1/2 |
| 76 | SR-1 | DQ675456 | 2006 | China | NS1/2/3 & VP1/2 |
| 77 | HN-2011 | JX992846 | 2008 | China | Complete genome |
| 78 | Nanjing200801 | FJ822038 | 2008 | China | NS1/2/3 & VP1/2 |
| 79 | Nanjing200802 | FJ822039 | 2008 | China | NS1 |
| 80 | S-1 | EU707335 | 2008 | China | NS1 |
| 81 | Tai'an | FJ853420 & FJ853421 | 2009 | China | NS1 & VP2 |
| 82 | PPV2010 | JN872448 | 2010 | China | Complete genome |
| 83 | NE-09 | JQ249926 | 2010 | China | VP2 |
| 84 | JY | HM627652 | 2011 | China | NS1 & VP2 |
| 85 | LZ | HM627653 | 2011 | China | NS1 & VP2 |
| 86 | JT | JN968975 | 2012 | China | NS1 & VP1/2 |
| 87 | GD2013 | KX242359 | 2013 | China | NS1/2/3 & VP1/2 |
| 88 | J-PPV | KF742500.2 | 2013 | China | Complete genome |
| 89 | HNLY201301 | MF447833 | 2013 | China | NS1/2/3 & VP1/2 |
| 90 | HNAY | KJ201927 | 2014 | China | NS1/2/3 & VP1/2 |
| 91 | HNZK-1 | KJ201928 | 2014 | China | NS1/2/3 & VP1/2 |
| 92 | HuN1 | MH183298 | 2015 | China | NS1 & VP1/2 |
| 93 | PPV1-DJH11 | MK092380 | 2015 | China | NS1 & VP1/2 |
| 94 | PPV1-DJH22 | MK092382 | 2015 | China | NS1 & VP1/2 |
| 95 | PPV1-DJH23 | MK092383 | 2015 | China | NS1 & VP1/2 |
| 96 | PPV1-DJH24 | MK092384 | 2015 | China | NS1 & VP1/2 |
| 97 | N | HM989009 | 2015 | China | NS1/2/3 & VP1/2 |
| 98 | TJ | KX233726 | 2016 | China | Complete genome |
| 99 | China-XY | MK993540 | 2017 | China | Complete genome |
| 100 | JSYZ20170418–30 | MZ577026 | 2017 | China | NS1/2/3 & VP1/2 |
| 101 | SDQD20200424–830 | MZ577027 | 2020 | China | NS1/2/3 & VP1/2 |
| 102 | CH/HN-3/2021 | MZ677266 | 2021 | China | NS1/2/3 & VP1/2 |
| 103 | CH/HN—H/2021 | MZ706996 | 2021 | China | NS1/2/3 & VP1/2 |
| 104 | BJ2 | OP235938 | 2022 | China | NS1/2/3 & VP1/2 |
| 105 | SDPV1 | ON924737 | 2022 | China | Complete genome |
| 106 | SDPV2 | ON924738 | 2022 | China | Complete genome |
| 107 | SDPV3 | ON924739 | 2022 | China | Complete genome |