Skip to main content
. Author manuscript; available in PMC: 2024 Mar 1.
Published in final edited form as: Nature. 2023 Aug 23;621(7978):344–354. doi: 10.1038/s41586-023-06457-y

Extended Data Fig. 3 |. Large structural differences between T2T-Y and previous GRCh Y assemblies.

Extended Data Fig. 3 |

a-b. Ampliconic genes and X-degenerate sequences revealed from alignments between GRCh38-Y (Y-axis) and T2T-Y (X-axis). a. Dotplot generated using LastZ93 after softmasking with WindowMasker94. b. Identity was computed from matches and mismatches over positions with alignments, excluding gaps. c. Structural differences revealed using PRG-TK95 against GRCh38-Y and GRCh37-Y in the euchromatic region of the Y chromosome.