Table 1. Genetically Encoded ERK activity Biosensors grouped based on their sensing modality.
Reporter Type |
Reporter name (aliases) | Subcellular Resolution of ERK activity | Dynamic Range | Response Time (approx.) | Sensitivity | Fluorescent Protein(s) | Cell Shape Sensitivity | CDK Sensitivity | Reference |
---|---|---|---|---|---|---|---|---|---|
FP-fused ERK |
FP-ERK (BFP-ERK, (GFP-ERK) |
No | + | 3min | + | BFP, GFP * | Yes | No | [52,79,185] |
Degron | FIRE | No | +++ | 150 min | +++ | mVenus * | No | No | [31] |
Kinase Translocation Reporter (KTR) |
ERK-KTR (ERKKTR, ERKTR) |
No | ++++ | 3 min | +++ | Clover * | Yes | Yes | [3] |
Forster Resonance Energy Transfer (FRET) |
EKAR | Yes | + | 1 min | ++ | mVenus, mCerulean | No | Yes | [27] |
EKAREV (EKARev, EKAR-EV) |
Yes | ++ | 1 min | ++ | YPet, ECFP | No | Yes | [181] | |
EKAR2G1 | Yes | + | 1 min | + | cp173Venus, cp227mTFP1 | No | Yes | [182] | |
EKAR-TVV | Yes | ++ | 1 min | ++ | cp173Venus-Venus, mTurquoise | No | Yes | [53,182] | |
RAB- EKARev |
Yes | ++ | 5 min | NA | ddRFP-A, ddRFP-B | No | Unknown | [183] | |
FPX-EKAR | Yes | + (50% of EKARev) | 5 min | + | Red-ddFP, Green-ddFP, ddFP (B) | No | Unknown | [184] | |
EKAR3 | Yes | + | 1 min | ++ | YPet, mTurquoise2 | No | Yes | [50] | |
EKAR4 | Yes | +++ | 1 min | ++ | ECFP, YPet | No | No | [36] | |
EKAR-EN4 (EKAREN4) |
Yes | +++ | 1 min | ++ | ECFP, YPet | No | No | [48] | |
EKAR-EN5 (EKAREN5) |
Yes | +++ | 1 min | +++ | YPet, mTurquoise2 | No | No | [48] |
Fluorescent protein fused ERK (FP-ERK) translocates partially to the nucleus when phosphorylated by MEK allowing average cellular activity to be estimated by the nuclear to cytosolic fluorescence ratio. The Degron reporter (FIRE) is stabilized upon phosphorylation by ERK such that its fluorescence indicates ERK activity on a scale of 3-12 hours. Upon phosphorylation, KTR reporters shift in their preference for nuclear import vs. export allowing their nuclear vs. cytosolic ratio to reflect the average cellular ERK activity on the scale of minutes. FRET reporters shift in conformation upon phosphorylation by ERK allowing the ratio of fluorescent protein intensities to reflect subcellular ERK activity on the scale of minutes. Subcellular resolution of ERK activity: yes indicates the capability for the reporter to be localized to different subcellular compartments and to therefore reflect the activity of a specific region. Response Time: an estimate of time from ERK activation to apparent localization/fluorescence change. Cell Shape Sensitivity: the apparent read-out of translocation-based reporters can be shifted independently of ERK by changes in cell shape. Cyclin Dependent Kinase (CDK) sensitivity: Some reporters can be phosphorylated independently of ERK by Cyclin Dependent Kinases. * any fluorescent protein can be theoretically used.