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. 2023 Nov 23;26(12):108525. doi: 10.1016/j.isci.2023.108525
REAGENT or RESOURCE SOURCE IDENTIFIER
Critical commercial assays

TruSeq RNA Library Prep Kit v2 https://emea.illumina.com/
NEBNext Small RNA Library Prep Set https://www.neb.com

Deposited data

Small RNA sequencing (DRG) dbGap dbGap:phs001158
Total RNA Sequencing (DRG) dbGap dbGap:phs001158
Long and Small RNA sequencing iPSC-derived neurons GEO Datasets GSE161530
Raw Data files and analyzed files Github mouzkolit/NOCICEPTRA2Analysis (https://doi.org/10.5281/zenodo.10117927)
NOCICEPTRA 2.0 Tool Github mouzkolit/NOCICEPTRA2.0 (https://doi.org/10.5281/zenodo.10117925)
The Human Dorsal Root Ganglion Transcriptome University of Texas at Dallas MR 15-237

Software and algorithms

excerpt v4.3.2 GitHub: mouzkolit/nociceptra2_analysis
Salmon v0.13.1 GitHub: muiphysiologie/NOCICEPTRA2.0,
Streamlit: nociceptra.streamlit.app
DESeq2 v1.40.2 https://github.gersteinlab.org/exceRpt/
WGCNA https://salmon.readthedocs.io/en/latest/salmon.html
Ashr v2.2-63 https://www.r-project.org/
lncSEA v2.0 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
MR-microT https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/
DuckDB v0.6.0 https://www.rdocumentation.org/packages/ashr/versions/2.0.5