Table 7.

Cold temperature-regulated gene expression of QTL-associated candidate genes.

Chr.	Position (Mb)	Gene annotation	Locus ID	Fold change	Data sourcea
1	41.22	OsACA6	LOC_Os01g71240	2.9; 3.9; 4.1; 5.8	PRJNA610422
				−3.8	PRJNA281699
3	26.82	OsANK	LOC_Os03g47640	4.2	PRJNA610422
3	27.01	OsANK	LOC_Os03g47686	−3.5; −1.5; −0.78	PRJDB6837
3	27.02	OsANK	LOC_Os03g47693	1.5	PRJNA564250
3	27.04	OsANK	LOC_Os03g47720	ns
3	28.60	OsGST3	LOC_Os03g50130	−1.3; −2.7	PRJDB2600
4	17.67	OsWAK38	LOC_Os04g29680	8.1; 2.8	PRJNA448164
4	17.75	OsWAK40	LOC_Os04g29790	−23.2	PRJDB2600
6	1.87	OsRLK-803	LOC_Os06g04370	−2.5; −4.7	PRJNA610422
				3.3	PRJNA281699
6	1.88	Transferase	LOC_Os06g04380	−1.7	PRJNA557063
				−1.7; −0.8	PRJNA281699
6	2.56	OsNAPL2	LOC_Os06g05660	2.1; 2.3	PRJNA448164
6	2.63	Transferase	LOC_Os06g05790	−2; −2.1	PRJDB2600
6	2.78	OsFBL27	LOC_Os06g06050	−3.5	PRJNA448164
				−1.9; −2.8	PRJNA430015
6	2.80	Esterase	LOC_Os06g06080	−2.7	PRJNA610422
				−2.0; −4.1	PRJNA448164
				−2.0	PRJNA354683
6	2.81	OsMPK6	LOC_Os06g06090	−1.4; −1.2	PRJNA448164
6	27.40	OsFKBP13	LOC_Os06g45340	−2.0; −7.2	PRJNA437981
				−4.6	PRJNA495106
6	27.78	CYP59A	LOC_Os06g45900	−1.8; −2.0; −3.0	PRJNA430015
6	28.04	OsNAC011	LOC_Os06g46270	−2.0; −2.4; −4.3; −3.3	PRJDB2600
6	28.05	Hydrolase	LOC_Os06g46284	1.3; 1.5	PRJNA610422
8	0.54	RF6	LOC_Os08g01870	−2.0; −2.1; −3.0; −3.2	PRJEB22031
8	4.65	OsbHLH070	LOC_Os08g08160	2.2; 2.9	PRJNA607661
8	16.86	LTPL130	LOC_Os08g27674	na
8	17.56	OsRLCK253	LOC_Os08g28710	−3.7	PRJNA340947
				18.4	PRJNA430015
11	4.97	OsPDIL1-1	LOC_Os11g09280	1.5; 1.3	PRJNA437981
				3.9; 7.1	PRJNA448164
11	5.03	OsFBX398	LOC_Os11g09360	ns

^a Yu et al. (2022).

ns, not significant; na, no available expression data.