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. 2023 Nov 17;52:109811. doi: 10.1016/j.dib.2023.109811
Subject Biological sciences
Specific subject area Structural biology
Data format Raw, Analyzed
Type of data X-ray diffraction data, Table, Image, Graph, Figure
Data collection Synchrotron: Pohang Light Source II (PLS-II)
Beamline: 1C
X-ray wavelength: 15.48 keV
X-ray bandwidth (ΔE/E): 1.2 %
Photon flux: ∼5 × 1012 photons/second
Beam size: 70 × 80 μm (full width at half maximum, vertical x horizontal)
Sample delivery: viscous medium-based injection via syringe and syringe pump
Sample flow rate: 1 μL/min
Detector: Pilatus3S 2 M (DECTRIS).
Data acquisition: 10 or 20 Hz
Data collection temperature: 26 ± 0.5°
Data source location Institution: Kookmin University
City/Town/Region: Seoul
Country: Republic of Korea
Data accessibility 1. Raw data diffraction images
Repository name: ZENODO
1) Data 1 (LysEdge50): X-ray exposed to the edge of the injection stream with an X-ray exposure time of 50 ms
- Digital Object Identifier: https://doi.org/10.5281/zenodo.7240990
- Direct URL to data: https://zenodo.org/records/7240990
2) Data 2 (LysCenter50): X-ray exposed to the center of the injection stream with an X-ray exposure time of 50 ms.
- Digital Object Identifier: https://doi.org/10.5281/zenodo.7239100
- Direct URL to data: https://zenodo.org/records/7239100
3) Data 3 (LysEdge100): X-ray exposed to the edge of the injection stream with an X-ray exposure time of 100 ms
- Digital Object Identifier: https://doi.org/10.5281/zenodo.7242977
- Direct URL to data: https://zenodo.org/records/7242977
4) Data 4 (LysCenter100): X-ray exposed to the center of the injection stream with an X-ray exposure time of 100 ms.
- Data identification number: https://doi.org/10.5281/zenodo.7242973
- Direct URL to data: https://zenodo.org/records/7242973
2. Structure factor and coordinate
Repository name: Protein Data Bank
1) Data 1: X X-ray exposed to the edge of the injection stream with an X-ray exposure time of 50 ms
- PDB code: 8H8T
- Data identification number: https://doi.org/10.2210/pdb8H8T/pdb
- Direct URL to data: https://www.rcsb.org/structure/8H8T
2) Data 2: X-ray exposed to the center of the injection stream with an X-ray exposure time of 50 ms.
- PDB code: 8H8U
- Data identification number: https://doi.org/10.2210/pdb8H8U/pdb
- Direct URL to data: https://www.rcsb.org/structure/8H8U
3) Data 3: X-ray exposed to the edge of the injection stream with an X-ray exposure time of 100 ms
- PDB code: 8H8V
- Data identification number: https://doi.org/10.2210/pdb8H8V/pdb
- Direct URL to data: https://www.rcsb.org/structure/8H8V
4) Data 4: X-ray exposed to the center of the injection stream with an X-ray exposure time of 100 ms.
- PDB code: 8H8W
- Data identification number: https://doi.org/10.2210/pdb8H8W/pdb
- Direct URL to data: https://www.rcsb.org/structure/8H8W
Related research article Y. Kim, K.H. Nam, Pink-Beam Serial Synchrotron Crystallography at Pohang
Light Source II, Crystals (2022) [1]https://doi.org/10.3390/cryst12111637