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. 2023 Nov 30;27(1):108599. doi: 10.1016/j.isci.2023.108599
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal to CD31 (clone WM59), APC ThermoFisher Cat. #17-0319-42; RRID: AB_10852842
Mouse monoclonal to CD31 (clone JC/70A) ThermoFisher Cat. #MA5-13188; RRID: AB_10982120
Mouse monoclonal to NFATC1 (clone 7A6) ThermoFisher Cat. #MA3-024; RRID: AB_2236037
Rabbit monoclonal to VIMENTIN (clone SP20) ThermoFisher Cat. #MA5-16409; RRID: AB_2537928
Mouse monoclonal to CD34 (clone 561), PE-Cy7 BioLegend Cat. #343616; RRID: AB_2629726
Mouse monoclonal to CD56 (clone 5.1H11), APC BioLegend Cat. #362504; RRID: AB_2563913
Mouse monoclonal to CD13 (clone WM15), PE BioLegend Cat. #301704; RRID: AB_314180
Rabbit monoclonal to NKX2.5 (clone E1Y8H) Cell Signaling Technology Cat. #8792; RRID: AB_2797667
Rabbit polyclonal to VE-CADHERIN Cell Signaling Technology Cat. #2158; RRID: AB_2077970
Mouse monoclonal to PERIOSTIN (clone F-10) Santa Cruz Biotechnology Cat. #sc-398631; RRID: AB_2934053
Rabbit polyclonal to SOX9 MilliporeSigma Cat. #AB5535; RRID: AB_2239761
Mouse monoclonal to αSMA (Clone 1A4) Abcam Cat. #ab7817; RRID: AB_262054
Mouse monoclonal to PDGFRβ (clone 28D4), BV786 BD Biosciences Cat. #743038;
RRID: AB_2741234
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 ThermoFisher Cat. #A-1100; RRID: AB_2534069
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 ThermoFisher Cat. #A-11008; RRID: AB_143165
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 568 ThermoFisher Cat. #A-11004; RRID: AB_2534072
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 568 ThermoFisher Cat. #A-11011; RRID: AB_143157

Chemicals, peptides, and recombinant proteins

Recombinant Human BMP10 R&D Cat. #2926-BP
Recombinant Human bFGF R&D Cat. #233-FB
Recombinant Human VEGF-165 R&D Cat. #293-VE
Recombinant Human/Mouse/Rat BMP2 R&D Cat. #355-BM
Recombinant Human TGF-beta 2 R&D Cat. #302-B2
Human Apo-Transferrin R&D Cat. #3188-AT
Penicillin/streptomycin ThermoFisher Cat. #15140122
GlutaMAX ThermoFisher Cat. #35050061
Bovine Serum Albumin Fraction V (BSA) ThermoFisher Cat. #15260037
Ascorbic Acid MilliporeSigma Cat. #A4544
2-Mercaptoethanol MilliporeSigma Cat. #M3148
DAPI MilliporeSigma Cat. #9564
Fetal Bovine Serum (FBS) MilliporeSigma Cat. #F4135
Fibronectin Human Plasma MilliporeSigma Cat. #F0895
Triton X-100 MilliporeSigma Cat. #93418
Sodium Azide MilliporeSigma Cat. #S2002
Tween-20 MilliporeSigma Cat. #P1379
DNase I MilliporeSigma Cat. # 260913
DMSO MilliporeSigma Cat. #D2650
4% Paraformaldehyde ThermoFisher Cat. # J19943K2
CHIR 99021 Tocris Cat. #4423
Collagenase Type II Worthington Cat. #LS004176
Thiazovivin Selleckchem Cat. #S1459
Matrigel, Growth Factor Reduced Corning Cat. #354230
HEPES Research Products International Cat. #H75050
Glycine Bio-Rad Cat. #1610718
Proteinase K Qiagen Cat. #19131
Accutase Accutase Cat. #AT104

Critical commercial assays

Superscript IV VILO ThermoFisher Cat. #11756050
PowerTrack SYBR Green ThermoFisher Cat. #A46012
RNA 6000 Nano Kit Agilent Cat. # 5067-1511
CD31 MicroBead Kit Miltenyi Biotec Cat. #130-091-935
CD34 MicroBead Kit Miltenyi Biotec Cat. #130-046-702

Deposited data

Raw & processed data from iPSC-derived populations This study GEO: GSE226476
15-week-old fetal human valve single-cell RNAseq data Liu et al., 202353 GEO: GSE228638

Experimental models: Cell lines

WTC11 (ACTN2-eGFP tagged, monoallelic) Coriell Institute Cat. #AICS-0075-085
MSN02-452,53 Gift from Dr. Dubois N/A

Oligonucleotides

See Table S1 This study Table S1

Software and algorithms

FCS Express 7 De Novo Software https://denovosoftware.com/
GraphPad Prism GraphPad https://www.graphpad.com/
R CRAN, Version 4.2.0 https://cran.r-project.org/
STAR v.2.7.10a54 https://github.com/alexdobin/STAR
Picard v2.26.10 http://broadinstitute.github.io/picard/
HTSeq v2.0.255 https://htseq.readthedocs.io/en/master/
DESeq256 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Enrichr58 https://maayanlab.cloud/Enrichr/
Seurat v467 https://satijalab.org/seurat/
FIJI https://imagej.net/software/fiji/

Other

RPMI 1640 ThermoFisher Cat. #11875093
B27 Supplement ThermoFisher Cat. #17504044
B27 Supplement, Minus Insulinf ThermoFisher Cat. #A1895601
DMEM, high glucose ThermoFisher Cat. #11965092
PBS, no calcium, no magnesium ThermoFisher Cat. #14190144
6-well clear flat bottom TC-treated culture plates Fisher Scientific Cat. #FB012927
24-well clear flat bottom TC-treated culture plates Fisher Scientific Cat. #FB012929
40um cell strainer Fisher Scientific Cat. #22363547
Fibroblast Growth Medium, Kit PromoCell Cat. #C-23110
Endothelial Cell Growth Medium MV2, Kit PromoCell Cat. #C-22121
HBSS Corning Cat. #21022CV
EasySep Buffer StemCell Technologies Cat. #20144
12-well chamber slide Ibidi Cat. #81201
Coverslips Ibidi Cat. #10811
VECTASHIELD PLUS Antifade Mounting Medium Vector Laboratories Cat. #H-1900
LS Column Miltenyi Biotec Cat. #130-042-401
Cell Counting Slides Bio-Rad Cat. #1450015
Trypan Blue Bio-Rad Cat. #1450021
Human Reference cDNA Takara Cat. #636693