TABLE 1.
Strain, plasmid, or construct | Genotype or descriptiona | Reference |
---|---|---|
E. coli strains | ||
JM105 | thi rpsL endA sbcB15 hspR4 Δ(lac-proAB) [F′ traD36 proAB lacIqΔM15] | 15 |
CSH50-Iq | rpsL Δ(lac-pro) [F′ traD36 proAB lacIqΔM15] | 13 |
Plasmids | ||
pMC1403 | ColE1 replicon, AprlacZYA* | 2 |
pACYC184 | p15a replicon, Cmr Tcr | 3 |
pKK223-3 | ColE1 replicon, Aprtac | 1 |
pOU82 | R1 replicon, AprlacZYA | 6 |
Constructs containing pas genes | ||
pP2H | pMC1403 vector, Apr, pas region 1240–1362b | This work |
pTac-pasA-pACYC | pACYC184 vector, Cmr, pas region 1316–1559 | This work |
pTac-pasB-pACYC | pACYC184 vector, Cmr, pas region 1518–1816 | This work |
pTac-pasC-pACYC | pACYC184 vector, Cmr, pas region 1789–2028 | This work |
pTac-pasAB-pACYC | pACYC184 vector, Cmr, pas region 1316–1816 | This work |
pTac-pasABC-pACYC | pACYC184 vector, Cmr, pas region 1316–2028 | This work |
pKmM0 | pTF-FC2 replicon, Kmr, 1–4910c | 12 |
pKmM1 | pTF-FC2 replicon, Kmr, 1–4911 pasA | 12 |
pKmM2 | pTF-FC2 replicon, Kmr, 1–4911 pasB | 12 |
pKmM3 | pTF-FC2 replicon, Kmr, 1–4911 pasC | 12 |
pKmM1del1d | pTF-FC2 replicon, Kmr, 1–4911, Δ1217–1321e | 12 |
pKmM1del2d | pTF-FC2 replicon, Kmr, 1–4911, Δ1232–1943e | 12 |
pOU-pasABC | pOU82 R1 replicon, Apr, pas region 1158–2027 | 12 |
pOU-tac-pasABC | pOU82 R1 replicon, Apr, tac, pas region 1158–2027 | This work |
Apr, ampicillin resistance; Kmr, kanamycin resistance; Cmr, chloramphenicol resistance; Tcr, tetracycline resistance; lacZYA*, lacZYA genes with deletion of lacZ promoter and ATG; tac, trp-lac hybrid promoter.
The pas region numbers are the nucleotide positions relative to those of the ClaI-PstI fragment of pTV100 (5).
Entire pTF-FC2 replicon from the ClaI site to the PstI site of pTV100 including the pas region (5).
Spontaneous deletions of the toxic plasmid pKmM1 (12).
Regions missing from the spontaneous deletions after PasA antidote inactivation (12).