Table 3.

Small (<60bp) InDels, SNVs per 100kbp of sequence and total large (>60bp) InDels of Chromosomes Assemblies for all Benchmarked Isolates.

Tool	Type	Small InDels per 100kbp	SNVs per 100kbp	Small InDels + SNVs per 100kbp	Large InDels
Hybracter hybrid	Hybrid	Median = 0.05 Minimum = 0 Maximum = 12.34	Median = 0.16 Minimum = 0 Maximum = 3.52	Median = 0.24 Minimum = 0 Maximum = 15.79	Total = 59 Median = 0 Minimum = 0 Maximum = 26
Dragonflye hybrid	Hybrid	Median = 0.49 Minimum = 0 Maximum = 11.56	Median = 0.03 Minimum = 0 Maximum = 2.21	Median = 0.74 Minimum = 0 Maximum = 13.41	Total = 91 Median = 1.5 Minimum = 1 Maximum = 29
Unicycler	Hybrid	Median = 0.28 Minimum = 0 Maximum = 9.5	Median = 1.25 Minimum = 0.25 Maximum = 4.13	Median = 1.49 Minimum = 0.43 Maximum = 13.62	Total = 134 Median = 2.5 Minimum = 0 Maximum = 41
Hybracter long	Long	Median = 0.49 Minimum = 0.06 Maximum = 24.82	Median = 1.07 Minimum = 0.07 Maximum = 10.46	Median = 2.08 Minimum = 0.37 Maximum = 35.29	Total = 66 Median = 1 Minimum = 0 Maximum = 27
Dragonflye long	Long	Median = 3.01 Minimum = 1.61 Maximum = 43.8	Median = 0.99 Minimum = 0.33 Maximum = 10.86	Median = 3.81 Minimum = 2.01 Maximum = 53.1	Total = 92 Median = 2 Minimum = 1 Maximum = 30