Table 3.

Small (<60bp) InDels, SNVs and large (>60bp) InDels of Chromosomes Assemblies for all Benchmarked Isolates.

Tool	Type	Small InDels	SNVs	Small InDels + SNVs	Large InDels
Hybracter hybrid	Hybrid	Median = 0 Minimum = 0 Maximum = 41	Median = 0 Minimum = 0 Maximum = 26	Median = 1 Minimum = 0 Maximum = 67	Total = 9 Median = 0 Minimum = 0 Maximum = 2
Dragonflye hybrid	Hybrid	Median = 2.5 Minimum = 0 Maximum = 112	Median = 0 Minimum = 0 Maximum = 64	Median = 4.5 Minimum = 0 Maximum = 154	Total = 70 Median = 2 Minimum = 0 Maximum = 12
Unicycler	Hybrid	Median = 11 Minimum = 0 Maximum = 125	Median = 34 Minimum = 0 Maximum = 165	Median = 57.5 Minimum = 3 Maximum = 290	Total = 87 Median = 1 Minimum = 0 Maximum = 16
Hybracter long	Long	Median = 16 Minimum = 1 Maximum = 743	Median = 21.5 Minimum = 0 Maximum = 156	Median = 54 Minimum = 1 Maximum = 852	Total = 11 Median = 1 Minimum = 0 Maximum = 3
Dragonflye long	Long	Median = 125 Minimum = 2 Maximum = 4814	Median = 34.5 Minimum = 0 Maximum = 2172	Median = 170.5 Minimum = 2 Maximum = 6332	Total = 68 Median = 2 Minimum = 0 Maximum = 12