Table 1.
IC50 and GR50 determinations on different PDGFRA- and KIT-mutants and GIST cell lines of ligands 1-13
Cpd | HTRF IC50 [nM] | KIT CTG GR50 [nM] | PDGFRA CTG GR50 [nM] | |||||
---|---|---|---|---|---|---|---|---|
PDGFRA-D842V | KIT-D816H | GIST-T1a | T1-D816E | T1-a-D842V | T1-a- G680R | GIST-48Bb | ratio GIST-48B/ T1-a-D842V | |
ava (1) | <0.1 | 0.5 ± 0.1 | 36 ± 10 | 67 ± 18 | 15 ± 8 | 1563 ± 241 | 1340 ± 173 | 89 |
2 | 7324 ± 2078 | 9303 ± 1208 | 6731 ± 2073 | 9481 ± 1038 | 2733 ± 517 | 2000 ± 403 | 7967 ± 2792 | 3 |
3 | 5588 ± 2557 | 1541 ± 852 | ≥10,000 | ≥10,000 | ≥10,000 | ≥10,000 | ≥10,000 | 1 |
4 | 35 ± 13 | 76 ± 45 | 5271 ± 509 | 8739 ± 1321 | 1887 ± 545 | ≥10,000 | ≥10,000 | 5 |
5 | 0.6 ± 0.1 | 1.5 ± 1.0 | 1484 ± 1203 | ≥10,000 | 163 ± 47 | ≥10,000 | ≥10,000 | 61 |
6 | 7351 ± 884 | 2158 ± 167 | ≥10,000 | ≥10,000 | ≥10,000 | ≥10,000 | ≥10,000 | 1 |
7 | 749 ± 142 | 204 ± 84 | 709 ± 196 | 1962 ± 443 | 8216 ± 1475 | ≥10,000 | ≥10,000 | 1 |
8 | 0.4 ± 0.1 | 2.3 ± 1.7 | 254 ± 74 | 515 ± 94 | 58 ± 13 | 2600 ± 384 | 1933 ± 472 | 33 |
9 | <0.1 | 0.4 ± 0.2 | 92 ± 16 | 235 ± 51 | 26 ± 5 | 2767 ± 459 | 4033 ± 653 | 155 |
10 | <0.1 | 0.5 ± 0.1 | 39 ± 6 | 86 ± 19 | 26 ± 21 | 3311 ± 534 | 4833 ± 2564 | 186 |
11 | <0.1 | 0.5 ± 0.2 | 39 ± 7 | 89 ± 23 | 24 ± 6 | 4033 ± 876 | 3467 ± 866 | 144 |
12 | 0.2 ± 0.1 | 0.6 ± 0.4 | 60 ± 12 | 131 ± 37 | 19 ± 6 | 3167 ± 58 | 4867 ± 1415 | 256 |
13 | 0.2 ± 0.1 | 2.0 ± 0.1 | 287 ± 176 | 637 ± 111 | 51 ± 7 | 5729 ± 435 | ≥10,000 | 196 |
Data presented as mean values ± s.d; n ≥ 3, where n represents the number of independent experiments.
T1-a cell lines: PDGFRA cell lines based on GIST-T1, generated by CRISPR/Cas9-mediated gene editing. Ava: avapritinib as reference inhibitor.
n.d. not determined, IC50 half-maximal inhibitory concentration, GR50 half-maximal growth inhibition rate.
aGIST-T1 (RRID:CVCL_4976, Val560_Tyr578del).
bControl cell line, which is neither KIT nor PDGFRA dependent and serves as an indicator for off-target toxicity.