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. 2024 Jan 2;15:63. doi: 10.1038/s41467-023-44376-8

Table 1.

IC50 and GR50 determinations on different PDGFRA- and KIT-mutants and GIST cell lines of ligands 1-13

Cpd HTRF IC50 [nM] KIT CTG GR50 [nM] PDGFRA CTG GR50 [nM]
PDGFRA-D842V KIT-D816H GIST-T1a T1-D816E T1-a-D842V T1-a- G680R GIST-48Bb ratio GIST-48B/ T1-a-D842V
ava (1) <0.1 0.5 ± 0.1 36 ± 10 67 ± 18 15 ± 8 1563 ± 241 1340 ± 173 89
2 7324 ± 2078 9303 ± 1208 6731 ± 2073 9481 ± 1038 2733 ± 517 2000 ± 403 7967 ± 2792 3
3 5588 ± 2557 1541 ± 852 ≥10,000 ≥10,000 ≥10,000 ≥10,000 ≥10,000 1
4 35 ± 13 76 ± 45 5271 ± 509 8739 ± 1321 1887 ± 545 ≥10,000 ≥10,000 5
5 0.6 ± 0.1 1.5 ± 1.0 1484 ± 1203 ≥10,000 163 ± 47 ≥10,000 ≥10,000 61
6 7351 ± 884 2158 ± 167 ≥10,000 ≥10,000 ≥10,000 ≥10,000 ≥10,000 1
7 749 ± 142 204 ± 84 709 ± 196 1962 ± 443 8216 ± 1475 ≥10,000 ≥10,000 1
8 0.4 ± 0.1 2.3 ± 1.7 254 ± 74 515 ± 94 58 ± 13 2600 ± 384 1933 ± 472 33
9 <0.1 0.4 ± 0.2 92 ± 16 235 ± 51 26 ± 5 2767 ± 459 4033 ± 653 155
10 <0.1 0.5 ± 0.1 39 ± 6 86 ± 19 26 ± 21 3311 ± 534 4833 ± 2564 186
11 <0.1 0.5 ± 0.2 39 ± 7 89 ± 23 24 ± 6 4033 ± 876 3467 ± 866 144
12 0.2 ± 0.1 0.6 ± 0.4 60 ± 12 131 ± 37 19 ± 6 3167 ± 58 4867 ± 1415 256
13 0.2 ± 0.1 2.0 ± 0.1 287 ± 176 637 ± 111 51 ± 7 5729 ± 435 ≥10,000 196

Data presented as mean values ± s.d; n ≥ 3, where n represents the number of independent experiments.

T1-a cell lines: PDGFRA cell lines based on GIST-T1, generated by CRISPR/Cas9-mediated gene editing. Ava: avapritinib as reference inhibitor.

n.d. not determined, IC50 half-maximal inhibitory concentration, GR50 half-maximal growth inhibition rate.

aGIST-T1 (RRID:CVCL_4976, Val560_Tyr578del).

bControl cell line, which is neither KIT nor PDGFRA dependent and serves as an indicator for off-target toxicity.