Table 4.
Summary of the publicly available GWAS summary statistics used in real data applications
| Disease | Source | Sample Size | #SNPs | #Overlapping SNPs (UKBB, 1KG, HM3) |
|---|---|---|---|---|
| Type 2 Diabetes (T2D) | DIAGRAM51 | n0 = 56,962n1= 12,171 | 1,938,21 | 718,340 |
| Coronary Artery Disease (CAD) | CARDIoGRAM52 | n0 = 64,762n1= 22,233 | 2,121,277 | 861,825 |
| Inflammatory Bowel Disease (IBD) | IIBDGC53 | n0 = 38,155n1= 48,485 | 4,911,413 | 952,376 |
| Breast Cancer (BC) | BCAC54 | n0 = 17,588n1 = 14,910 | 11,050,495 | 1,016,333 |
The sources of GWAS summary statistics, their sample sizes, and the SNP numbers are presented in the table. We also report the number of overlapping SNPs among UKBB, 1KG, and HM3. These SNPs were used in PRStuning.