| Bacterial and virus strains |
|
|
E. coli DH5α |
NEB |
Cat#C2987H |
|
E. coli GB06 |
Lab stock |
N/A |
|
E. coli DB3.1 |
Lab stock |
N/A |
|
| Chemicals, peptides, and recombinant proteins |
|
| K2HPO4
|
Sigma-Aldrich |
P3786 |
| KH2PO4
|
Merck |
1.04873 |
| MgSO4·7H2O |
Sigma-Aldrich |
3138 |
| NH4Cl |
Sigma-Aldrich |
A9434 |
| CaCl2·2H2O |
Merck |
C7902 |
| KCl |
Merck |
1.04936 |
| Tris base |
Sigma-Aldrich |
T1503 |
| Acetic acid, glacial |
Merck |
1.00063 |
| Agar |
Fisher Scientific |
BD 214010 |
| Sucrose |
Alfa Aesar |
36508 |
| Alt-R S.p. Cas9 Nuclease V3 |
IDT |
Cat#1081058 |
| Platinum SuperFi II PCR master mix (2×) |
Thermo Fisher Scientific |
Cat#12368010 |
| Platinum II Hot-Start PCR master mix (2×) |
Thermo Fisher Scientific |
Cat#14000013 |
| Paromomycin |
TCI |
P2092 |
| Nourseothricin |
Jena Bioscience |
AB-102XL |
| Blasticidin S |
Carl Roth |
CP14.2 |
| Spectinomycin |
Merck |
S4014-5G |
| EvaGreen Plus |
Biotium |
31077-T |
| GelGreen |
Biotium |
41005 |
| Betaine |
Merck |
61962 |
| NEBuilder HiFi assembly master mix |
NEB |
E2621L |
| BspQI |
NEB |
R0712L |
| BtsI-v2 |
NEB |
R0667L |
| SacI-HF |
NEB |
R3156L |
| EcoRI-HF |
NEB |
R3101L |
| NheI-HF |
NEB |
R3131S |
| Hutner’s trace elements |
Chlamydomonas Resource Center |
N/A |
| IGEPAL CA-630 |
Merck |
I8896 |
| Difco Bacto Agar |
BD |
BD 214010 |
| Nuclease-free duplex buffer |
IDT |
11-05-01-12 |
| QuickExtract solution |
Lucigen |
QE09050 |
|
| Critical commercial assays |
|
| ZymoPURE II Plasmid Midiprep Kit |
Zymo Research |
D4200 |
| ZymoPURE II Plasmid Miniprep Kit |
Zymo Research |
D4211 |
| DNA Clean & Concentrator-25 |
Zymo Research |
D4033 |
| Neon electroporator |
Thermo Fisher Scientific |
MPK5000 |
| 10 μL Neon transfection kit |
Thermo Fisher Scientific |
MPK1025 |
| QuantStudio 7 Pro |
Thermo Fisher Scientific |
A43185 |
| Light board |
Artograph |
LightPad 940LX |
| FACS sorter |
Sony |
MA-900 |
|
| Experimental models: Organisms/strains |
|
|
Chlamydomonas WT (+) |
Chlamydomonas Resource Center |
CC-620 |
|
Chlamydomonas WT (-) |
Chlamydomonas Resource Center |
CC-621 |
|
Chlamydomonas WT (-) |
Dutcher Lab |
CC124 32M |
|
Chlamydomonas WT (+) |
Chlamydomonas Resource Center |
CC-125 |
|
| Oligonucleotides |
|
| Alt-R CRISPR-Cas9 tracrRNA, 20 nmol |
IDT |
Cat#1072533 |
| CRISPR-Cas9 crRNAs, 2 nmol |
IDT |
N/A |
| crMTM_q_1F |
IDT |
TGCTAGCTCAATCTGACTGAAGGT |
| crMTM_q_1R |
IDT |
GGGACATGGTGCTCGGGG |
| crMTP_q_1F |
IDT |
AGTATCACAGTACGGAATGCCC |
| crMTP_q_1R |
IDT |
TCATTGTTTGCTAGGGGTGC |
|
| Recombinant DNA |
|
| pAB262_NAT-R |
This study |
N/A |
| pAPN_BSD |
This study |
N/A |
| pAPN_AphVIII |
This study |
N/A |
| pAPN_AadA |
This study |
N/A |
| pAPN_noAB-ARMC2-BSD-ccdb |
This study |
N/A |
| pAPN_noAB-ARMC2-PAR-ccdb |
This study |
N/A |
| pAPN_noAB-ARMC2-NAT-ccdb |
This study |
N/A |
| Custom synthetic fragments |
Twist Bioscience |
N/A |
| Custom synthetic fragments |
IDT |
N/A |
| Custom synthetic fragments |
Eurofins Genomics |
N/A |
|
| Software and algorithms |
|
| Geneious Prime |
Biomatters |
2021-2023.0.1 |
| Design and Analysis |
Thermo Fisher Scientific |
2.6.0 |
| Fiji |
Fiji |
https://imagej.net/software/fiji/ |
| iQ3 |
Andor |
https://andor.oxinst.com/products/iq-live-cell-imaging-software/ |