Table 4.
Parameter estimates and likelihood value tests for both the branch and site models
| Branch Model | Model Type | np | LnL | Estimates of parameters | Model comparison | P LRT |
| 0 | 71 | -13405.594 | ω = 0.13009 | M1/M0 | 0.1561 | |
| 1 | 72 | -13404.588 | ||||
| Site Model | M0 | 71 | -13315.825 | ω = 0.11829 | M3/M0 | 0.0000 |
| M3 | 75 | -13142.984 | p: 0.06077, 0.41136, 0.52786; w: 0.00392, 0.06801, 0.17790 | |||
| M1a | 72 | -13315.230 | p: 0.99524, 0.00476; w: 0.11821, 1.00000 | M2a/M1a | 1.0000 | |
| M2a | 74 | -13315.230 | p: 0.99524, 0.00130, 0.00346; w: 0.11821, 1.00000, 1.00000 | |||
| M7 | 72 | -13173.316 | p = 1.07769, q = 8.56326 | M8/M7 | 0.9984 | |
| M8 | 74 | -13173.318 |
p0 = 0.99999, p = 1.07769, q = 8.56327, (p1 = 0.00001), w = 1.00000 |