Table 1.
A summary of current INSDC genome submissions for three viruses and two bacterial pathogens. Viruses: Human immunodeficiency virus 1 (HIV1), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and mpox. Bacteria: Salmonella enterica and Staphylococcus aureus . Submissions to NCBI Virus DB were counted as ‘genomes’ if their sequence length fell between the following sequence lengths: HIV-1 : 8500–10 000 nt, SARS-CoV-2 : 28 000–30 000 nt, mpox: 190 000–200 000 nt. Queries were performed on 15 October 2023
|
Components of current genome submissions |
HIV1 |
SARS-CoV-2 |
mpox |
||
|---|---|---|---|---|---|
|
NCBI PD or Virus DB Totals |
25 985 |
8 318 267 |
6329 |
571 697 |
107 363 |
|
BioProject |
349 (1 %) |
6 968 975 (84 %) |
2754 (44 %) |
571 697 (100 %) |
107 363 (100 %) |
|
BioSample |
1214 (7 %) |
6 850 374 (82 %) |
1281 (20 %) |
571 697 (100 %) |
107 363 (100 %) |
|
Raw reads |
143 (0.5 %) |
4 738 148 (70 %) |
861 (14 %) |
541 152 (95 %) |
75 094 (70 %) |
|
Consensus/Assembly |
25 985 (100 %) |
8 318 267 (100 %) |
6329 (100 %) |
488 235 (85 %) |
83 191 (77 %) |