Table 3.
Statistics for the final genome assemblies as determined by QUAST. Reference strains indicated with an * are also included for comparison. Listed are the number of total contigs, the number of contigs greater than 1000, 10 000, and 50 000 bp, the largest contig in bp, the total number of bp, %GC content, the N50 and L50 values, and the number of N’s per 100 Kbp. The first five shaded entries are Photobacterium kishitanii strains whereas all others are P. leiognathi and P. ‘mandapamensis’ strains.
|
Strain |
Total bp |
Contigs |
Largest contig |
N50 |
L50 |
GC(%) |
ns |
CDS |
rRNA |
tRNA |
|---|---|---|---|---|---|---|---|---|---|---|
|
ahane.1.5 |
5 100 844 |
5 |
3 353 657 |
3 353 657 |
1 |
39.02 |
126 |
4680 |
53 |
207 |
|
calba.1.1 |
5 200 973 |
7 |
3 263 220 |
3 263 220 |
1 |
38.96 |
792 |
4892 |
46 |
206 |
|
ckamo.1.1 |
5 039 339 |
4 |
3 317 370 |
3 317 370 |
1 |
38.96 |
2489 |
6136 |
8 |
173 |
|
pjapo.1.1T |
5 000 498 |
4 |
3 339 696 |
3 339 696 |
1 |
39.36 |
12 224 |
6596 |
25 |
196 |
|
pjapo.1.1T* |
4 695 065 |
117 |
925 439 |
174 214 |
6 |
39.10 |
0 |
4217 |
6 |
84 |
|
AJ-1a* |
4 711 244 |
65 |
468 721 |
238 774 |
7 |
41.14 |
0 |
4156 |
13 |
131 |
|
ajapo.3.1* |
4 794 394 |
51 |
480 625 |
245 626 |
8 |
40.98 |
0 |
4214 |
12 |
137 |
|
ajapo.4.1* |
4 576 643 |
52 |
696 744 |
262 428 |
5 |
41.2 |
0 |
3991 |
11 |
124 |
|
ajapo.5.5 |
4 690 822 |
3 |
3 177 212 |
3 177 212 |
1 |
41.37 |
0 |
4004 |
59 |
307 |
|
ajapo.5.6 |
4 729 792 |
2 |
3 174 233 |
3 174 233 |
1 |
41.27 |
0 |
4052 |
62 |
213 |
|
ajapo.8.1 |
4 878 649 |
4 |
3 245 602 |
3 245 602 |
1 |
41.12 |
0 |
4255 |
44 |
192 |
|
ajapo.8.2 |
4 886 267 |
3 |
3 261 968 |
3 261 968 |
1 |
41.15 |
0 |
4239 |
53 |
194 |
|
ATCC 25521T |
4 750 881 |
3 |
3 269 131 |
3 269 131 |
1 |
41.02 |
0 |
4255 |
41 |
194 |
|
Ik.8.1 |
4 765 281 |
3 |
3 231 342 |
3 231 342 |
1 |
41.15 |
0 |
4130 |
47 |
197 |
|
Ik.8.2 |
4 783 140 |
3 |
3 218 875 |
3 218 875 |
1 |
41.17 |
0 |
4104 |
56 |
207 |
|
JS01* |
4 874 529 |
3 |
3 251 164 |
3 251 164 |
1 |
41.20 |
0 |
4288 |
57 |
205 |
|
Kume.1.2 |
4 835 311 |
3 |
3 186 767 |
3 186 767 |
1 |
41.25 |
1634 |
4156 |
49 |
197 |
|
Kume.1.3 |
4 818 955 |
3 |
3 185 044 |
3 185 044 |
1 |
41.23 |
1911 |
4137 |
43 |
194 |
|
lequu.1.1 |
4 825 624 |
4 |
3 204 041 |
3 204 041 |
1 |
41.19 |
0 |
4192 |
62 |
209 |
|
LF-1a |
5 104 659 |
5 |
3 267 821 |
3 267 821 |
1 |
40.96 |
1222 |
4607 |
39 |
192 |
|
ljone.10.1 |
5 276 714 |
8 |
3 313 411 |
3 313 411 |
1 |
41.34 |
1 |
4535 |
62 |
207 |
|
LN-1a |
5 174 290 |
10 |
3 359 026 |
3 359 026 |
1 |
41.21 |
54 |
4760 |
44 |
195 |
|
LN-I.1 |
5 490 629 |
15 |
3 405 483 |
3 405 483 |
1 |
41.53 |
20 |
5017 |
62 |
200 |
|
lnuch.19.1 |
5 237 683 |
5 |
3 439 577 |
3 439 577 |
1 |
41.18 |
162 |
4618 |
57 |
197 |
|
LR-VIII.1 |
5 791 416 |
21 |
3 699 906 |
3 699 906 |
1 |
41.28 |
22 860 |
5602 |
32 |
147 |
|
lrivu.20.11 |
4 738 701 |
2 |
3 228 638 |
3 228 638 |
1 |
41.24 |
0 |
4069 |
58 |
209 |
|
lrivu.4.1* |
5 268 214 |
20 |
1 730 671 |
979 827 |
2 |
40.98 |
6943 |
4332 |
3 |
72 |
|
lsplen.1.1 |
5 292 468 |
7 |
3 284 001 |
3 284 001 |
1 |
41.01 |
813 |
4768 |
37 |
174 |
|
Mot.1.1 |
4 676 757 |
2 |
3 973 505 |
3 973 505 |
1 |
41.25 |
13 |
4069 |
62 |
208 |
|
Mot.1.2 |
4 947 312 |
2 |
3 234 211 |
3 234 211 |
1 |
41.2 |
2558 |
4336 |
62 |
206 |
|
Res.4.1* |
4 730 847 |
65 |
766 940 |
129 576 |
9 |
40.99 |
0 |
4098 |
13 |
152 |
|
StJ.4.21 |
4 877 430 |
4 |
3 228 436 |
3 228 436 |
1 |
41.23 |
623 |
4361 |
63 |
208 |
|
StJ.4.81 |
4 713 802 |
3 |
3 157 280 |
3 157 280 |
1 |
41.22 |
6 |
4047 |
45 |
195 |
|
StP.1.10 |
4 781 050 |
3 |
3 175 608 |
3 175 608 |
1 |
41.15 |
19 |
4194 |
47 |
194 |
|
StP.2.23 |
4 685 648 |
3 |
3 130 376 |
3 130 376 |
1 |
41.17 |
11 |
4043 |
33 |
182 |
|
SV.1.1 |
4 749 844 |
2 |
3 174 417 |
3 174 417 |
1 |
41.13 |
1321 |
4126 |
38 |
190 |
|
SV.1.2 |
4 718 353 |
2 |
3 184 478 |
3 184 478 |
1 |
41.17 |
0 |
4083 |
51 |
200 |
|
SV.5.1 |
4 521 083 |
2 |
3 089 627 |
3 089 627 |
1 |
41.27 |
91 |
4122 |
35 |
193 |
|
svers.1.1* |
4 598 918 |
11 |
1 910 320 |
1 477 894 |
2 |
41.06 |
742 |
4031 |
6 |
75 |