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. Author manuscript; available in PMC: 2024 Jan 3.
Published in final edited form as: Mol Cancer Ther. 2019 Nov 21;19(2):447–459. doi: 10.1158/1535-7163.MCT-19-0360

Table 1.

Docking scores and ALDH-inhibitory activity for KS100 and other ALDH inhibitors.

Compound Docking scores IC50s (nmol/L)

ALDH1A1 ALDH2 ALDH3A1 ALDH1A1 ALDH2 ALDH3A1
Isatin −5.46 −6.398 −5.819 15,635 ± 1,821 168,661 ± 28,679 5,047 ± 304
Cpd 3 −7.686 −9.839 −7.695 44 ± 12 72,136 ± 1,640 11,866 ± 548
CM037 −11.276 −7.137 −8.137 98 ± 34 2,278 ± 250 1,774 ± 303
CVT10216 −7.892 −11.809 −8.924 2,427 ± 194 53 ± 2 2,719 ± 608
CB7 −8.159 −7.846 −14.576 139,016 ± 16,934 144,409 ± 11,470 298 ± 29
DEAB −9.154 −10.026 −11.211 89 ± 23 833 ± 277 15,119 ± 4,091
KS100 −10.247 −8.716 −13.851 207 ± 10 1,410 ± 248 240 ± 50

Note: Isatin, Cpd 3, CM037, CVT10216, CB7, DEAB, and KS100 were docked into the active site pockets of ALDH1A1, 2, and 3A1. Docking scores were calculated using GLIDE 6.6 in Maestro 10.1. Enzyme inhibition studies for ALDH1A1, 2, and 3A1 were performed as described in the Materials and Methods. KS100 displayed low IC50 values for all three ALDH isoforms tested. Preexisting isoform-specific ALDH inhibitors (Cpd 3 and CM037 for ALDH1A1, CVT10216 for ALDH2, CB7 for ALDH3A1) and the multi-ALDH isoform inhibitor, DEAB, were used as positive controls.