Table 1.
Statistics and sources of data collected
| Species | WGS projects | WGS samples | RNASeq projects | RNASeq samples | Genomes | Cultivars |
|---|---|---|---|---|---|---|
| areca | − | − | − | − | 1 from CNGB CNSA (31) | 42 from GRIN (32) |
| banana | 5 from NCBI SRA (33) 3 from EBI ENA (34) | 65 from NCBI SRA 165 from EBI ENA | 12 from NCBI SRA 1 from EBI ENA | 388 from NCBI SRA 21 from EBI ENA | 3 from Banana Genome Hub (35) | 209 from GRIN |
| cassava | 8 from NCBI SRA 1 from CassavaBase (22) | 399 from NCBI SRA 174 from CassavaBase | 13 from NCBI SRA | 356 from NCBI SRA | 2 from ITBB-CATAS 1 from HNU 1 from NCBI Genome (36) 1 from Phytozome (37) | 6,074 from CIAT 4,359 from IITA |
| cocoa | 2 from NCBI SRA | 207 from NCBI SRA | 4 from NCBI SRA | 130 from NCBI SRA | 2 from NCBI Genome | 208 from GRIN |
| coconut | - | - | 1 from NCBI SRA | 9 from NCBI SRA | 1 from NCBI Genome | 60 from GRIN |
| coffee | 1 from NCBI SRA | 93 from NCBI SRA | 5 from NCBI SRA 4 from EBI ENA | 123 from NCBI SRA 57 from EBI ENA | 4 from NCBI Genome | 500 from GRIN |
| litchi | 1 from NCBI SRA | 72 from NCBI SRA | 10 from NCBI SRA | 228 from NCBI SRA | 1 from NCBI Genome | 91 from GRIN |
| longan | 1 from NCBI SRA | 95 from NCBI SRA | 3 from NCBI SRA | 90 from NCBI SRA | 1 from NCBI Genome 1 from NGDC GWH (38) | 68 from GRIN |
| mango | 1 from NCBI SRA | 48 from NCBI SRA | 4 from NCBI SRA | 49 from NCBI SRA | 2 from NCBI Genome 1 from NGDC GWH | 310 from GRIN |
| oil palm | 1 from NCBI SRA 1 from DDBJ DRA (39) | 26 from NCBI SRA 72 from DDBJ DRA | 9 from NCBI SRA 1 from EBI ENA | 126 from NCBI SRA 16 from EBI ENA | 1 from NCBI Genome | 91 from GRIN |
| pepper | − | − | − | − | 1 from HZAU | 43 from GRIN |
| pineapple | 1 from NCBI SRA 1 from DDBJ DRA | 86 from NCBI SRA 1 from DDBJ DRA | 8 from NCBI SRA | 208 from NCBI SRA | 2 from NCBI Genome | 362 from GRIN |
| rubber tree | 1 from NGDC GSA (40) | 545 from NGDC GSA | 6 from NCBI SRA | 102 from NCBI SRA | 1 from RRI-CATAS 1 from NCBI Genome | 110 from GRIN |
| sugarcane | − | − | 6 from NCBI SRA | 82 from NCBI SRA | 1 from NCBI Genome 1 from NGDC GWH | 682 from GRIN |
| vanilla | − | − | 1 from NCBI SRA | 12 from NCBI SRA | 4 from NCBI Genome | 172 from GRIN |
| Total | 28 | 2,048 | 88 | 1,997 | 34 | 13,381 |
Note: CIAT: The International Center for Tropical Agriculture (https://ciat.cgiar.org); IITA: International Institute of Tropical Agriculture (https://my.iita.org/accession2/); HNU: Hainan University; HZAU: Huazhong Agricultural University; ITBB-CATAS: Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Science; RRI-CATAS: Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences.