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. 2023 Nov 13;52(D1):D522–D528. doi: 10.1093/nar/gkad1050

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© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Several platforms are now available on OpenProt v2.0. Annotations for 12 different species are available for download in different formats. Users may upload a variant calling file (VCF) and run the OpenVar genomic annotator. OpenVar provides a listing of impact (i.e. modifier, low, moderate, high) on AltProts and novel isoforms, in addition to RefProts. OpenCustomDB generate sample-specific protein sequence databases from RNAseq data. Users need to upload two files: a VCF and a transcription expression file (processed tab-separated TSV).