Table 2.
MIADE field | DisProt field | Ontology/CV | Proteins | Regions |
---|---|---|---|---|
Construct alterations | Protein mutation | HGVS nomenclature | 77 | 183 |
Protein modification | PSI-MOD ontology | 31 | 89 | |
Tag | PSI-MI ontology | 22 | 63 | |
Non-standard amino acid | PSI-MOD ontology | 15 | 23 | |
Label and dyes | PSI-MI ontology | 3 | 6 | |
Experimental conditionsa | pH | NCI Thesaurus OBO Edition CV | 13 | 34 |
Temperature | NCI Thesaurus OBO Edition CV | 4 | 8 | |
Pressure | NCI Thesaurus OBO Edition CV | 0 | 0 | |
Oxidation-reduction potential | NCI Thesaurus OBO Edition CV | 0 | 0 | |
Sample | Interacting small molecule | IDPO ontology | 152 | 356 |
Interacting protein | IDPO ontology | 134 | 278 | |
Interacting nucleic acid | IDPO ontology | 12 | 27 | |
Interacting lipid | IDPO ontology | 8 | 16 | |
Interacting antibody | IDPO ontology | 8 | 11 | |
Interacting membrane | IDPO ontology | 5 | 11 | |
In-cell experiment | IDPO ontology | 3 | 5 |
aThe units of parameters describing experimental conditions are defined in the Measurement Ontology and deviations from the expected value in the experimental parameters are expressed by the following descriptors: ‘within normal range’, ‘increased’, ‘decreased’, ‘not specified’, ‘not relevant’.