Table 4 –
Genomes used in orthology, synteny, and positive selection analyses
| Species | Assembly | Citation |
|---|---|---|
| Myodes glareolus | CUNY_Mgla_1.0 | This paper |
| Cavia porcellus * | Cavpor3.0 | (120) |
| Cavia aperea * | CavAp1.0 | (121) |
| Marmota marmota | marMar2.1 | (122) |
| Microtus ochrogaster * | Mic0ch1.0 | (123) |
| Mus musculus | GRCm39 | (124) |
| Oryctolagus cuniculus * | OryCun2.0 | (120) |
| Dipodomys ordii * | Dord_2.0 | (120) |
| Jaculus jaculus | JacJac1.0 | (125) |
| Rattus norvegicus | Rnor_6.0 | (126) |
| Mus pahari | PAHARI_EIJ_v1.1 | (127) |
| Mus caroli | CAROLI_EIJ_v1.1 | (127) |
| Mus spretus | SPRET_EiJ_v1 | (128) |
| Mus spicilegus | MUSP714 | (129) |
| Cricetulus griseus | CHOK1GS | (130) |
| Mesocricetus auratus | MesAur1.0 | (131) |
| Peromyscus maniculatus | HU_Pman_2.1 | (132) |
| Nannospalax galili | S.galili_v1.0 | (133) |
| Octodon degus * | OctDeg1.0 | (134) |
| Heterocephalus glaber (F) | HetGla_female_1.0 | (135) |
| Chinchilla lanigera * | ChiLan1.0 | (136) |
| Urocitellus parryi | ASM342692v1 | (137) |
| Ictidomys tridecemlineatus | SpeTri2.0 | (138) |
| Homo sapiens ** | GRCh38 | (139) |
*
Species with unrooted molars;
**
Peptide annotation used as outgroup only in OrthoFinder analysis.