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. 2023 Dec 7;27(1):108673. doi: 10.1016/j.isci.2023.108673
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Viobility Fixable Dye 405/520 Miltenyi Biotec 120-028-574
CD4–APC-Vio770 Miltenyi Biotec Cat# 130-113-223; RRID: AB_2726034
CD8–APC Miltenyi Biotec Cat# 130-110-679; RRID: AB_2659237
HLA-DR–VioBlue Miltenyi Biotec Cat# 130-111-794; RRID: AB_2652162
CD38–PE-Vio770 Miltenyi Biotec Cat# 130-113-432; RRID: AB_2733228
Granzyme-B–PE Miltenyi Biotec Cat# 130-116-486; RRID: AB_2727564
Perforin–FITC Miltenyi Biotec Cat# 130-118-189; RRID: AB_2733686
CD8–PerCP-Vio700 Miltenyi Biotec Cat# 130-110-682; RRID: AB_2659249
IL-17A–FITC Miltenyi Biotec Cat# 130-120-410; RRID: AB_2752083
IL-4–PE Miltenyi Biotec Cat# 130-123-698; RRID: AB_2905285
TNF-α–PE-Vio770 Miltenyi Biotec Cat# 130-120-492; RRID: AB_2784483
IFN-γ–VioBlue Miltenyi Biotec Cat# 130-119-577; RRID: AB_2751736
IL-2–APC Miltenyi Biotec Cat# 130-111-304; RRID: AB_2652419
Goat anti-human k light chain antibody biotinylated Bethyl Laboratories Cat# A80-115B; RRID: AB_1966048
Goat anti-human λ light chain antibody biotinylated Bethyl Laboratories Cat# A80-116B; RRID: AB_1966050
Human Anti-SARS-CoV-2 Spike RBD Monoclonal Antibody, clone BIB116 Creative Diagnostics CABT-CS044

Biological samples

PBMCs This study N/A
Plasma This study N/A

Chemicals, peptides, and recombinant proteins

PepTivator® SARS-CoV-2 Prot_S Miltenyi Biotec 130-126-700
PepTivator® SARS-CoV-2 Prot_N Miltenyi Biotec 130-126-698
PepTivator® SARS-CoV-2 Prot_M Miltenyi Biotec 130-126-702
Phorbol myristate acetate (PMA) Sigma-Aldrich 16561-29-8
Ionomycin Sigma-Aldrich 56092-82-1
Brefeldin A ThermoFisher 00-4506-51
Paraformaldehyde solution, 4% in PBS ThermoFisher 15670799
Saponin Sigma-Aldrich 8047-15-2
Carbonate-bicarbonate Sigma-Aldrich C3041-50cap
Avidin-HRP ThermoFisher 18-4100-51
3,3’,5,5’-tetramethylbenzidine (TMB) Invitrogen 229280010
H2SO4 Sigma-Aldrich 4803641000
Soluble human angiotensin-converting enzyme 2 (ACE2) protein fused to a human IgG1 Fc tag InvivoGen Fc-hace2
SARS-CoV-2 (COVID-19) S protein RBD, His Tag (MALS verified) ACROBiosystems SPD-C52H3
Recombinant wild-type SARS-CoV-2 RBD-HRP Biaffin GmbH & Co KG SPD-SR2H0-200
Lymphosep, Lymphocyte Separation Media Biowest L0560
Dimethyl Sulfoxide EuroClone 67-68-5

Critical commercial assays

MACSPlex Cytokine 12 kit, human Miltenyi Biotec 130-099-169
QIAamp Viral RNA Mini Kit QIAGEN 221413

Oligonucleotides

CDC 2019-nCoV_N1 primers and probe set Centers for Disease Control and Prevention, CDC N/A
TaqPath™ 1-Step RT-qPCR Master Mix CG ThermoFisher A15299

Software and algorithms

FlowLogic 8 Inivai Technologies N/A
FlowJo 10.8 BD Biosciences N/A
Prism 9.4 GraphPad by Dotmatics N/A
SPICE 6.0 National Institutes of Health N/A

Other

Vacutainer EDTA BD Biosciences 367525
High-binding 96-well plates Greiner Bio-One 655061
Fetal bovine serum EuroClone ECS0180L
Bovine serum albumin Sigma-Aldrich A7030-100G
RPMI 1640 w/o L-Glutamine EuroClone ECB2000
PBS Dulbecco's w/o Calcium w/o Magnesium EuroClone ECB4004
Penicillin-Streptomycin Sigma P4333-100ML
L-Glutamine Gibco 25030-149
TWEEN® 20 Sigma P9416-100ML
FACSVerse™ BD Biosciences N/A
Sunrise™ TECAN N/A
EnSight™ Multimode Plate Reader PerkinElmer N/A