Skip to main content
. 2024 Jan 6;15:341. doi: 10.1038/s41467-023-44629-6

Table 2.

Comparison of accuracy and features between machine learning models

Model Input type Target type D–MAE (Å)
Makoś et al.38 CR, CP CMa 0.170
Jackson et al.37 CR, CP Positions 0.244b
Pattanaik et al.39 CR, CP, GR, GP Distances 0.225b
Choi40 CR, CP, (CR+CP)/2 Distances 0.095b
TSDiff GR, GP Positions 0.137c, 0.063d, 0.067d

The input type, target type, and accuracy of the models are compared. CR and CP denote the geometries of reactants and products, respectively, and GR and GP denote the 2D graphs of reactants and products, respectively. (CR+CP)/2 denotes the interpolated geometry between CR and CP.

aCM indicates the Coulomb matrix.

bThe values are borrowed from Choi40.

cThe value was evaluated without considering conformer matching, meaning that a single generated transition state (TS) for each reaction was used to evaluate the mean absolute error of interatomic distance (D–MAE).

dThese values were calculated for TSs generated from single and eight sampling rounds, only if they matched the corresponding reference geometry after saddle point optimization, covering 53.2% and 84.6% of the test reactions, respectively.