REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
CD163 (Human MIF) | Leica Biosystems | CD163-L-CE; RRID: AB_2920861 |
CD206 (Human MIF) | Abcam | Ab64693; RRID: AB_1523910 |
Pan-Cytokeratin (Human MIF) | Agilent | M3515; RRID: AB_2132885 |
E-cadherin (Human MIF) | Agilent | M3612; RRID: AB_2076672 |
E-cadherin (Mouse MIF) | Thermo Fisher Scientific | 13–1900; RRID: AB_2533005 |
Vimentin (Mouse MIF) | Thermo Fisher Scientific | PA5-27231; RRID: AB_2544707 |
Pan-Cytokeratin (Mouse MIF) | Abcam | ab6401; RRID: AB_305450 |
Pan-Cytokeratin (Mouse MIF) | Dako | M3515; RRID: AB_2132885 |
AF488-CD206 (Mouse MIF) | Biolegend | 141709; RRID: AB_10933252 |
COX-2 (Mouse MIF, IHC) | Abcam | ab15191; RRID: AB_2085144 |
MACH 2 Mouse HRP-Polymer (IHC) | Biocare Medical | MHRP520 |
MACH 2 Rabbit HRP-Polymer (IHC) | Biocare Medical | RHRP520 |
Rat-on-Mouse HRP-Polymer (IHC) | Biocare Medical | RT517 |
MACH 2 Rabbit AP-Polymer (IHC) | Biocare Medical | RALP525 |
mCherry (IHC-P) | Thermo Fisher Scientific | PA5-34974; RRID: AB_2552323 |
Pimonidazole (IHC-F) | Hypoxyprobe | HP1-100; RRID: AB_2811309 |
COX-2 (Human IHC) | Abcam | Ab15191; RRID: AB_2085144 |
Cytokeratin14 (IHC) | Biolegend | 905303; RRID: AB_2734678 |
Cytokeratin17 (IHC) | Novus | NBP1-32824; RRID: AB_2133042 |
F4/80 (IHC) | Genetex | GTX26640; RRID: AB_385952 |
CD206 (IHC) | Abcam | ab64693; RRID: AB_1523910 |
VEGF (IHC) | Thermo Fisher Scientific | PA5-85171; RRID: AB_2792317 |
CD31 (MIF) | R&D Systems | AF3628; RRID: AB_2161028 |
TGF-β1 (IF) | MilliporeSigma | SAB4502954; RRID: AB_10747473 |
VEGF-A (IF) | Thermo Fisher Scientific | MA5-13182; RRID: AB_10981661 |
E-cadherin (IF, WB) | Thermo Fisher Scientific | 13–1900; RRID: AB_2533005 |
N-cadherin (IF, WB) | BD Transduction Laboratories | 610920; RRID: AB_2077527 |
Arginase-1 (WB) | Cell Signaling Technology | 93668; RRID: AB_2800207 |
GAPDH (WB) | MilliporeSigma | G9545; RRID: AB_796208 |
Vimentin (WB) | BD Pharmingen | 550513; RRID: AB_393716 |
E-cadherin (WB) | Biolegend | 147306; RRID: AB_2563230 |
COX-1 (WB) | Cayman Chemical | 160110; RRID: AB_10078135 |
COX-2 (WB) | Cell Signaling Technology | 4842; RRID: AB_2084968 |
mPGES2 (WB) | Cayman Chemical | 160145; RRID: AB_10894462 |
TGF-β1 (WB) | Bioss Antibodies | bs-0086R; RRID: AB_10856457 |
VEGF (WB) | Abcam | ab68334; RRID: AB_1925554 |
PE-CD45 (FACS, Compensation control) | Biolegend | 103105; RRID: AB_312970 |
BV421-CD45 (FACS, Compensation control) | Biolegend | 103133; RRID: AB_10899570 |
PE/Cy7-CD45 (FACS, Compensation control) | Biolegend | 103113; RRID: AB_312978 |
AF647-CD45 (FACS, Compensation control) | Biolegend | 103123; RRID: AB_493534 |
BV785-CD45 (FACS) | Biolegend | 103149; RRID: AB_2564590 |
PE-F4/80 (FACS) | Biolegend | 123109; RRID: AB_893498 |
BV421-CD11c (FACS) | Biolegend | 117343; RRID: AB_2563099 |
FITC-CD11b (FACS) | Biolegend | 101205; RRID: AB_312788 |
PE/Cy7-CD11b (FACS) | Biolegend | 101215; RRID: AB_312798 |
AF647-MHC class II (FACS) | Biolegend | 107617; RRID: AB_493526 |
Bacterial and virus strains | ||
lentivirus for firefly luciferase with UBC promoter + IRES2-mCherry-IRES-puromycin |
GeneCopoeia | LPP-hLUC-Lv247-050 |
Biological samples | ||
Clinical breast cancer cases | OUHSC Pathology Archive | N/A |
Chemicals and recombinant proteins | ||
Matrigel GFR | Corning | 356231 |
D-Luciferin | PerkinElmer | 122799 |
Clodronate liposomes | Liposoma | CP-020 |
Celecoxib | Cayman Chemical | 10008672 |
PF04418948 | Cayman Chemical | 15016 |
ONO8711 | Cayman Chemical | 14070 |
L798106 | Santa Cruz Biotechnology | sc-204047 |
GW627368X | Cayman Chemical | 10009162 |
CP544326 | Cayman Chemical | 22945 |
17-phenyl trinor Prostaglandin E2 | Cayman Chemical | 14810 |
ONO4819 | Cayman Chemical | 13618 |
Lipopolysaccharides | MilliporeSigma | L3012 |
IFN-γ | Tonbo Biosciences | 21-8311-U020 |
Prostaglandin E2 | Cayman Chemical | 14010 |
Collagenase A | MilliporeSigma | 10103586001 |
DNase I | MilliporeSigma | 10104159001 |
Liberase | MilliporeSigma | 05401119001 |
Indomethacin | MilliporeSigma | I7378 |
Protease inhibitor | MilliporeSigma | 04-693-159-001 |
Pimonidazole | Hypoxyprobe | HP-100 |
Butylated Hydroxytoluene | Spectrum | B1196 |
Betazoid DAB Chromogen | Biocare Medical | BDB2004 |
Vulcan Fast Red Chromogen | Biocare Medical | FR805 |
Cytosine β-D-arabinofuranoside hydrochloride | MilliporeSigma | C6645 |
Critical commercial assays | ||
Mouse PGE2 ELISA | Cayman Chemical | 514010 |
Mouse VEGF ELISA | RayBiotech | ELM-VEGF-1 |
Mouse Free Active TGF-β1 ELISA | Biolegend | 437707 |
Hypoxisense 680 | PerkinElmer | NEV11070 |
Deposited data | ||
RNA-sequence of mouse macrophage | This paper | SRA: PRJNA1031635 |
Experimental models: Cell lines | ||
Py230 murine breast cancer cell line | Gift from Dr. Lesley G. Ellies (University of California, San Diego, CA, USA) | N/A |
Py2T murine breast cancer cell line | Gift from Dr. Gerhard Christofori (University of Basel, Basel, Switzerland) | N/A |
NCTC clone 929 (L-929) | ATCC | CCL-1 |
bEnd.3 murine endothelial cell line | ATCC | CRL-2299 |
Experimental models: Organisms/strains | ||
C57BL/6J (B6) | The Jackson Laboratory | Strain#000664 |
FVB/NJ (FVB) | The Jackson Laboratory | Strain#001800 |
B6.Cg-Tg(CAG-DsRed∗MST)1Nagy/J (DsRed) | The Jackson Laboratory | Sarin#006051 |
B6.129S4-Ptgs2tm2.1Hahe/J (Cox2luc/luc) | The Jackson Laboratory | Strain#030853 |
B6.129-Ptger2tm1Brey/J (EP2 KO) | The Jackson Laboratory | Strain#004376 |
Oligonucleotides | ||
Primer for RT-qPCR | Integrated DNA Technologies | Table S4 |
Primer for Genotyping | Integrated DNA Technologies | Table S4 |
Software and algorithms | ||
Living Image Analysis software version 4.7.3 | PerkinElmer | N/A |
GraphPad Prism software version 10.0.0 | GraphPad Software | N/A |
Aperio ImageScope software version 12.4.3.7001 | Leica Biosystems | N/A |
ZEN lite software version 3.3.89.0000 | Carl Zeiss Microscopy | N/A |
ImageJ software version 1.53i | National Institutes of Health | N/A |
Wound healing size plugin for ImageJ | https://doi.org/10.1371/journal.pone.0232565 | |
FlowJo software version 10.8.0 | Becton Dickinson | N/A |
SAS 9.4 | SAS Institute | N/A |
JMP 16.0.0. | SAS Institute | N/A |
R version 4.1.2 | R Development Core Team | N/A |
BioRender | BioRender | N/A |
Adobe Illustrator 28.0 | Adobe | N/A |