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. 2023 Dec 19;4(12):101330. doi: 10.1016/j.xcrm.2023.101330
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

CD163 (Human MIF) Leica Biosystems CD163-L-CE; RRID: AB_2920861
CD206 (Human MIF) Abcam Ab64693; RRID: AB_1523910
Pan-Cytokeratin (Human MIF) Agilent M3515; RRID: AB_2132885
E-cadherin (Human MIF) Agilent M3612; RRID: AB_2076672
E-cadherin (Mouse MIF) Thermo Fisher Scientific 13–1900; RRID: AB_2533005
Vimentin (Mouse MIF) Thermo Fisher Scientific PA5-27231; RRID: AB_2544707
Pan-Cytokeratin (Mouse MIF) Abcam ab6401; RRID: AB_305450
Pan-Cytokeratin (Mouse MIF) Dako M3515; RRID: AB_2132885
AF488-CD206 (Mouse MIF) Biolegend 141709; RRID: AB_10933252
COX-2 (Mouse MIF, IHC) Abcam ab15191; RRID: AB_2085144
MACH 2 Mouse HRP-Polymer (IHC) Biocare Medical MHRP520
MACH 2 Rabbit HRP-Polymer (IHC) Biocare Medical RHRP520
Rat-on-Mouse HRP-Polymer (IHC) Biocare Medical RT517
MACH 2 Rabbit AP-Polymer (IHC) Biocare Medical RALP525
mCherry (IHC-P) Thermo Fisher Scientific PA5-34974; RRID: AB_2552323
Pimonidazole (IHC-F) Hypoxyprobe HP1-100; RRID: AB_2811309
COX-2 (Human IHC) Abcam Ab15191; RRID: AB_2085144
Cytokeratin14 (IHC) Biolegend 905303; RRID: AB_2734678
Cytokeratin17 (IHC) Novus NBP1-32824; RRID: AB_2133042
F4/80 (IHC) Genetex GTX26640; RRID: AB_385952
CD206 (IHC) Abcam ab64693; RRID: AB_1523910
VEGF (IHC) Thermo Fisher Scientific PA5-85171; RRID: AB_2792317
CD31 (MIF) R&D Systems AF3628; RRID: AB_2161028
TGF-β1 (IF) MilliporeSigma SAB4502954; RRID: AB_10747473
VEGF-A (IF) Thermo Fisher Scientific MA5-13182; RRID: AB_10981661
E-cadherin (IF, WB) Thermo Fisher Scientific 13–1900; RRID: AB_2533005
N-cadherin (IF, WB) BD Transduction Laboratories 610920; RRID: AB_2077527
Arginase-1 (WB) Cell Signaling Technology 93668; RRID: AB_2800207
GAPDH (WB) MilliporeSigma G9545; RRID: AB_796208
Vimentin (WB) BD Pharmingen 550513; RRID: AB_393716
E-cadherin (WB) Biolegend 147306; RRID: AB_2563230
COX-1 (WB) Cayman Chemical 160110; RRID: AB_10078135
COX-2 (WB) Cell Signaling Technology 4842; RRID: AB_2084968
mPGES2 (WB) Cayman Chemical 160145; RRID: AB_10894462
TGF-β1 (WB) Bioss Antibodies bs-0086R; RRID: AB_10856457
VEGF (WB) Abcam ab68334; RRID: AB_1925554
PE-CD45 (FACS, Compensation control) Biolegend 103105; RRID: AB_312970
BV421-CD45 (FACS, Compensation control) Biolegend 103133; RRID: AB_10899570
PE/Cy7-CD45 (FACS, Compensation control) Biolegend 103113; RRID: AB_312978
AF647-CD45 (FACS, Compensation control) Biolegend 103123; RRID: AB_493534
BV785-CD45 (FACS) Biolegend 103149; RRID: AB_2564590
PE-F4/80 (FACS) Biolegend 123109; RRID: AB_893498
BV421-CD11c (FACS) Biolegend 117343; RRID: AB_2563099
FITC-CD11b (FACS) Biolegend 101205; RRID: AB_312788
PE/Cy7-CD11b (FACS) Biolegend 101215; RRID: AB_312798
AF647-MHC class II (FACS) Biolegend 107617; RRID: AB_493526

Bacterial and virus strains

lentivirus for firefly luciferase with UBC promoter +
IRES2-mCherry-IRES-puromycin
GeneCopoeia LPP-hLUC-Lv247-050

Biological samples

Clinical breast cancer cases OUHSC Pathology Archive N/A

Chemicals and recombinant proteins

Matrigel GFR Corning 356231
D-Luciferin PerkinElmer 122799
Clodronate liposomes Liposoma CP-020
Celecoxib Cayman Chemical 10008672
PF04418948 Cayman Chemical 15016
ONO8711 Cayman Chemical 14070
L798106 Santa Cruz Biotechnology sc-204047
GW627368X Cayman Chemical 10009162
CP544326 Cayman Chemical 22945
17-phenyl trinor Prostaglandin E2 Cayman Chemical 14810
ONO4819 Cayman Chemical 13618
Lipopolysaccharides MilliporeSigma L3012
IFN-γ Tonbo Biosciences 21-8311-U020
Prostaglandin E2 Cayman Chemical 14010
Collagenase A MilliporeSigma 10103586001
DNase I MilliporeSigma 10104159001
Liberase MilliporeSigma 05401119001
Indomethacin MilliporeSigma I7378
Protease inhibitor MilliporeSigma 04-693-159-001
Pimonidazole Hypoxyprobe HP-100
Butylated Hydroxytoluene Spectrum B1196
Betazoid DAB Chromogen Biocare Medical BDB2004
Vulcan Fast Red Chromogen Biocare Medical FR805
Cytosine β-D-arabinofuranoside hydrochloride MilliporeSigma C6645

Critical commercial assays

Mouse PGE2 ELISA Cayman Chemical 514010
Mouse VEGF ELISA RayBiotech ELM-VEGF-1
Mouse Free Active TGF-β1 ELISA Biolegend 437707
Hypoxisense 680 PerkinElmer NEV11070

Deposited data

RNA-sequence of mouse macrophage This paper SRA: PRJNA1031635

Experimental models: Cell lines

Py230 murine breast cancer cell line Gift from Dr. Lesley G. Ellies (University of California, San Diego, CA, USA) N/A
Py2T murine breast cancer cell line Gift from Dr. Gerhard Christofori (University of Basel, Basel, Switzerland) N/A
NCTC clone 929 (L-929) ATCC CCL-1
bEnd.3 murine endothelial cell line ATCC CRL-2299

Experimental models: Organisms/strains

C57BL/6J (B6) The Jackson Laboratory Strain#000664
FVB/NJ (FVB) The Jackson Laboratory Strain#001800
B6.Cg-Tg(CAG-DsRed∗MST)1Nagy/J (DsRed) The Jackson Laboratory Sarin#006051
B6.129S4-Ptgs2tm2.1Hahe/J (Cox2luc/luc) The Jackson Laboratory Strain#030853
B6.129-Ptger2tm1Brey/J (EP2 KO) The Jackson Laboratory Strain#004376

Oligonucleotides

Primer for RT-qPCR Integrated DNA Technologies Table S4
Primer for Genotyping Integrated DNA Technologies Table S4

Software and algorithms

Living Image Analysis software version 4.7.3 PerkinElmer N/A
GraphPad Prism software version 10.0.0 GraphPad Software N/A
Aperio ImageScope software version 12.4.3.7001 Leica Biosystems N/A
ZEN lite software version 3.3.89.0000 Carl Zeiss Microscopy N/A
ImageJ software version 1.53i National Institutes of Health N/A
Wound healing size plugin for ImageJ https://doi.org/10.1371/journal.pone.0232565
FlowJo software version 10.8.0 Becton Dickinson N/A
SAS 9.4 SAS Institute N/A
JMP 16.0.0. SAS Institute N/A
R version 4.1.2 R Development Core Team N/A
BioRender BioRender N/A
Adobe Illustrator 28.0 Adobe N/A