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. 2020 Dec 31;8(4):10.1128/microbiolspec.ame-0014-2020. doi: 10.1128/microbiolspec.ame-0014-2020

TABLE 1.

Pangenome analysis of E. coli, 1997-2018. Core genes are all genes shared among all strains belonging to the species E. coli as defined by the 16S rDNA sequence.

Reference Number of E. coli strains sequenced Number of core genes Number of pan-genome genes
Blattner et al. (1997) 1 -- 4,288
Perna et al. (2001) 2 4,029 5,416
Rasko et al. (2008) 17 2,200 >13,000a
Sun et al. (2016) 26 2,168 6,797
Her et al. (2018) 59 2,874 15,950
Kaas et al. (2012) 186 1,702 16,373
Yang et al. (2018) 491 867 43,415
a

Extrapolated.