Table 2.
GWAS and QTL mapping results showing LRR genes involved in both quantitative resistance and MGR responses in sugar pine
| Analysis | Resistance | Marker | Scaffold | Gene | LG | PFAM domain |
|---|---|---|---|---|---|---|
| GWAS | MGR | AX-175441014 | scaffold589011 | PILA_07835 | NA | NB-ARC, LRR_1, RPW8, NACHT |
| GWAS | MGR | AX-175545318 | super2806 | PILA_16685 | NA | LRR_1, Pkinase_Tyr, Pkinase, LRRNT_2 |
| QTL mapping | Quantitative | AX-175540379 | scaffold420245 | PILA_24437 | 4 | LRR_2 |
| QTL mapping | Quantitative | AX-175585823 | scaffold72706 | PILA_04003 | 4 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |
| QTL mapping | Quantitative | seq-rs55884-SP | scaffold60793 | PILA_28990 | 5 | F-box, LRR_1 |
| QTL mapping | Quantitative | seq-rs56868-SP | scaffold62717 | PILA_25059 | 5 | LRR_1, Pkinase_Tyr, Pkinase, LRRNT_2 |
| QTL mapping | Quantitative | AX-175449157 | scaffold100032 | PILA_23861 | 5 | LRR_1, NB-ARC, TIR, LRR_3, NACHT |
| QTL mapping | Quantitative | AX-175681833 | super5997 | PILA_30024 | 7 | TIR, NB-ARC, LRR_1, DUF1863 |
| QTL mapping | Quantitative | AX-175719692 | super5997 | PILA_30024 | 7 | TIR, NB-ARC, LRR_1, DUF1863 |
| QTL mapping | Quantitative | AX-175472959 | super3789 | PILA_06586 | 12 | LRR_1, Pkinase_Tyr, LRRNT_2, Pkinase |
| QTL mapping | Quantitative | AX-175611159 | scaffold47917 | PILA_09968 | 12 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |
| QTL mapping | Quantitative | AX-175668639 | scaffold47917 | PILA_09968 | 12 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |
| QTL mapping | Quantitative | AX-175925756 | scaffold47917 | PILA_09968 | 12 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |
| QTL mapping | Quantitative | AX-175948941 | scaffold47917 | PILA_09968 | 12 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |
| QTL mapping | Quantitative | seq-rs37720-SP | scaffold47917 | PILA_09968 | 12 | NB-ARC, TIR, LRR_1, NACHT, Arch_ATPase, LRR_3 |