Table 2.
Annotations for the top ten tissue-specific, differentially expressed lncRNAs identified through online database analysis. Labels: FCvalue (Fold change value), MG (Mytilus galloprovincialis), LCo_g/m (Cochamó gills/mantle), LYa_g/m (Yaldad gills/mantle).
| Samples | Query lncRNA Contig | FCvalue | lncLoc Location | LNCPedia Sequence Ontology class | LNCPedia & LncBook Gene Name | RNACentral Hits | RNACentral MG Hits | RNACentral MG ID | e-value | Identity (%) |
|---|---|---|---|---|---|---|---|---|---|---|
| LCo_g | Contig_0009434_ | 3416 | Nucleus | lincRNA/intergenic/antisense | lnc-NXPH1-2 | 482 | 9 | URS00021A9E09_29158 | 4.5e+03 | 66.7 |
| Contig_0053071_ | 2495 | Nucleus | Antisense | HSALNG0067894 | 694 | 18 | URS000218D0FD_29158 | 1.1e+01 | 56.0 | |
| Contig_0118039_ | 2481 | Cytoplasm | lincRNA/intergenic/antisense | Lnc-FRG2C-5 | 184 | 6 | URS000219B59F_29158 | 1.0e-124 | 98.2 | |
| Contig_0166152 | 2257 | Nucleus | Antisense | HSALNG0130830 | 288 | 2 | URS00021C0FC5_29158 | 1.3e-02 | 58.8 | |
| Contig_0087233_ | 1982 | Nucleus | lincRNA/intergenic/antisense | lnc-ASB9-2 | 185 | 2 | URS00021D0278_29158 | 4.6e+03 | 47.4 | |
| Contig_0043161_ | 1941 | Nucleus | lincRNA/intergenic/antisense | Lnc-ATG5-31 | 346 | 2 | URS00021E4514_29158 | 2.8e+04 | 60.5 | |
| Contig_0099084_ | 1705 | Nucleus | Intronic/sense | Lnc-GSX2-1 | 438 | 12 | URS000219561A_29158 | 1.4e+03 | 66.7 | |
| Contig_0108244_ | 1662 | Nucleus | Antisense | CALML3-AS1 | 259 | 2 | URS00021AB5FE_29158 | 4.7e+04 | 64.1 | |
| Contig_0184225 | 1265 | Nucleus | lincRNA/intergenic | HSALNG0049232 | 25 | 1 | URS00021A2D91_29158 | 2.1e+04 | 55.1 | |
| Contig_0176068 | 776 | Cytoplasm | Intronic/sense | lnc-PLA2G4F-3 | 62 | – | – | – | – | |
| LCo_m | Contig_0171681 | −1400 | Nucleus | Antisense | HSALNG0072944 | 171 | 4 | URS00021D6B21_29158 | 8.4e+03 | 68.1 |
| Contig_0188421 | −968 | Nucleus | lincRNA/intergenic | HSALNG0045657 | 815 | 757 | URS00021E994E_29158 | 1.2e-08 | 54.6 | |
| Contig_0054268_ | −536 | Cytoplasm | Antisense | lnc-CREB5-2 | 766 | 9 | URS00021AABEF_29158 | 2.2e+03 | 58.0 | |
| Contig_0059020_ | −516 | Nucleus | Intronic/sense | lnc-TNFRSF19-8 | 256 | 6 | URS00021EB48D_29158 | 4.8e+04 | 61.4 | |
| Contig_0158861 | −516 | Nucleus | lincRNA/intergenic | lncRNA 1312 | 78 | 5 | URS00021B734A_29158 | 4.9e+3 | 63.5 | |
| Contig_0090188_ | −509 | Cytoplasm | lincRNA/intergenic | lnc-SH2D1B-5 | 382 | 16 | URS00021DF148_29158 | 5.5e+03 | 65.4 | |
| Contig_0184493 | −379 | Nucleus | lincRNA/intergenic | lnc-BCAS1-6 | 36 | – | – | – | – | |
| Contig_0068815_ | −348 | Nucleus | Antisense | lnc-COL28A1-1 | 213 | 14 | URS00021BAFFC_29158 | 4.8e+03 | 58.8 | |
| Contig_0139582 | −344 | Cytoplasm | lincRNA/intergenic | HSALNG0026539 | 199 | 1 | URS00021B3785_29158 | 6.4e+04 | 65.5 | |
| Contig_0159625 | −341 | Nucleus | Intronic/sense | lnc-EHHADH-1 | 162 | 5 | URS00021D69B0_29158 | 1.7e+00 | 58.9 | |
| LYa_g | Contig_0103992_ | 12,514 | Nucleus | lincRNA/intergenic | HSALNG0101238 | 176 | 5 | URS00021A23F3_29158 | 4.1e+03 | 66.2 |
| Contig_0043791_ | 5981 | Nucleus | Antisense/bidirectional promoter | lnc-PRSS27-2 -4 | 217 | 6 | URS00021B053A_29158 | 7.4e+02 | 55.5 | |
| Contig_0053558_ | 2435 | Cytoplasm | lincRNA/intergenic | lnc-OR5AK2-1 | 635 | 40 | URS0002195345_29158 | 6.0e+03 | 64.3 | |
| Contig_0069641_ | 741 | Nucleus | lincRNA/intergenic | HSALNG0109213 | 248 | 8 | URS00021D8DA0_29158 | 5.3e+02 | 56.1 | |
| Contig_0167221 | 486 | Nucleus | Antisense | HSALNG0053093 | 37 | – | – | – | – | |
| Contig_0150090 | 405 | Nucleus | Intronic/sense | lnc-ABCA9-5 | 79 | – | – | – | – | |
| Contig_0141412 | 356 | Nucleus | Antisense | lnc-BNIP2-4 | 50 | 1 | URS00021BAFF4_29158 | 6.4e+04 | 62.5 | |
| Contig_0013111_ | 306 | Nucleus | lincRNA/intergenic | Lnc-PTER-2 | 407 | 9 | URS00021B0BBA_29158 | 6.2e-01 | 54.0 | |
| Contig_0003822_ | 299 | Nucleus | lincRNA/intergenic | Lnc-FOXL1-2 | 727 | 54 | URS000218C466_29158 | 6.2e+00 | 58.1 | |
| Contig_0132878 | 296 | Cytoplasm | lincRNA/intergenic | Lnc-HNRNPA2B1-4 | 117 | 3 | URS00021E4116_29158 | 1.7e-10 | 59.5 | |
| LYa_m | Contig_0118050_ | −2714 | Cytoplasm | lincRNA/intergenic | lnc-TRIM43-7 | 372 | 15 | URS00021A8627_29158 | 4.0e+03 | 56.1 |
| Contig_0178066 | −450 | Nucleus | Antisense | CASC15 | 15 | – | – | – | – | |
| Contig_0090527_ | −375 | Cytoplasm | lincRNA/intergenic | lnc-PDLIM1-2 | 227 | 7 | URS00021DB9AF_29158 | 3.7e+04 | 64.9 | |
| Contig_0187540 | −338 | Nucleus | Intronic/sense | lnc-EIF4E3-7 | 89 | – | – | – | – | |
| Contig_0058892_ | −307 | Nucleus | lincRNA/intergenic | LINC02372 | 826 | 27 | URS00021CA876_29158 | 5.0e+03 | 65.0 | |
| Contig_0145887 | −204 | Nucleus | lincRNA/intergenic | LINC01387 | 67 | – | – | – | – | |
| Contig_0173437 | −198 | Nucleus | Antisense | Lnc-TNFRSF17-2 | 80 | – | – | – | – | |
| Contig_0167250 | −196 | Nucleus | lincRNA/intergenic | lncRNA 1270 | 57 | 1 | URS00021D1E6F_29158 | 3.6e+04 | 76.7 | |
| Contig_0004931_ | −187 | Nucleus | lincRNA/intergenic | lnc-LRCH1-5 | 294 | 17 | URS00021D7F17_29158 | 1.7e+03 | 60.9 | |
| Contig_0184179 | −180 | Nucleus | Antisense | ATXN8OS | 44 | – | – | – | – |