Table 3.
Annotations for the top ten location-specific, differentially expressed lncRNAs identified through online database analysis. Labels: FCvalue (Fold change value), MG (Mytilus galloprovincialis), LCo (local individuals form Cochamó), LYa (locals from Yaldad).
| Samples | Query lncRNA Contig | FCvalue | lncLoc Location | LNCPedia Sequence Ontology class | LNCPedia & LncBook Gene Name | RNACentral Hits | RNACentral MG Hits | RNACentral MG ID | e-value | Identity (%) |
|---|---|---|---|---|---|---|---|---|---|---|
| LCo | Contig_0001041_ | 2191 | Cytoplasm | lincRNA/intergenic | lnc-ARF1-3 | 754 | 2 | URS00021BD1DA_29158 | 2.7e+03 | 63.0 |
| Contig_0157363 | 1262 | Nucleus | lincRNA/intergenic | HSALNG0011272 | 97 | – | – | – | – | |
| Contig_0077759_ | 1170 | Nucleus | lincRNA/intergenic | lnc-NYAP2-9 | 868 | 3 | URS0002196DB8_29158 | 3.5e+04 | 61.6 | |
| Contig_0131765 | 1011 | Nucleus | lincRNA/intergenic | lnc-PPP1R3D-1 | 212 | 64 | URS00021BE1C5_29158 | 1.0e+01 | 59.7 | |
| Contig_0067287_ | 937 | Cytoplasm | lincRNA/intergenic | lnc-STYX-5 | 623 | 1 | URS00021B73B1_29158 | 1.2e+05 | 59.5 | |
| Contig_0040600_ | 788 | Cytoplasm | Antisense | CIBAR1-DT | 661 | 14 | URS0002198EF4_29158 | 3.5e+04 | 60.0 | |
| Contig_0142415 | 760 | Nucleus | lincRNA/intergenic/antisense | lnc-KDM6A-1 | 758 | 3 | URS00021A7D7A_29158 | 5.0e+04 | 58.9 | |
| Contig_0167970 | 641 | Nucleus | Antisense | EGOT | 132 | – | – | – | – | |
| Contig_0104312_ | 621 | Nucleus | lincRNA/intergenic | lnc-GJA5-1 | 841 | 3 | URS00021B4BCF_29158 | 8.4e+04 | 58.6 | |
| Contig_0076990_ | 612 | Nucleus | lincRNA/intergenic | lnc-KHDRBS3-4 | 781 | 2 | URS00021DD398_29158 | 2e+04 | 62.9 | |
| LYa | Contig_0126088_ | −4338 | Nucleus | lincRNA/intergenic | Lnc-NCAM2-13 | 544 | 3 | URS00021A2660_29158 | 3.2e+0 | 71.1 |
| Contig_0154899 | −3358 | Nucleus | lincRNA/intergenic | HSALNT0181310 | 198 | – | – | – | – | |
| Contig_0171681 | −2488 | Nucleus | lincRNA/intergenic | HSALNT0082546 | 599 | 4 | URS00021D6B21_29158 | 2.3e+4 | 68.1 | |
| Contig_0174947 | −1977 | Nucleus | lincRNA/intergenic | lnc-SOD2-2 | 130 | – | – | – | – | |
| Contig_0110380_ | −1695 | Nucleus | lincRNA/intergenic | lnc-EPHA4-2 | 627 | 1 | URS00021D8142_29158 | 5.1e+4 | 58.7 | |
| Contig_0046952_ | −1508 | Nucleus | lincRNA/intergenic/antisense | lnc-MYO1E-1 | 885 | 17 | URS00021CB95B_29158 | 2.6e+0 | 90.4 | |
| Contig_0095494_ | −1506 | Nucleus | lincRNA/intergenic/antisense | HSALNT0054759 | 845 | – | – | – | – | |
| Contig_0166992 | −1112 | Nucleus | Intronic/sense | lnc-ITGA1-1 | 818 | 3 | URS00021B2700_29158 | 1.9e+4 | 51.5 | |
| Contig_0135620 | −1046 | Nucleus | lincRNA/intergenic | HSALNT0183595 | 782 | 18 | URS00021E811F_29158 | 7.5e+1 | 50.3 | |
| Contig_0125135_ | −1028 | Cytoplasm | Antisense | lnc-PAICS-3 | 656 | 4 | URS00021EC6F0_29158 | 1.3e+5 | 65.6 |