Table 1.
The top significant single-nucleotide polymorphisms (SNPs) identified in dorsal feather color traits.
| Trait | Chr | Position | −Log10(p) | REF | ALT | Gene |
|---|---|---|---|---|---|---|
| RCA | Chr3 | 11106947 | 16.928888 | C | A | CEP68 |
| Chr1 | 203570330 | 12.13432 | C | A | TENM4 | |
| chr3 | 39330988 | 10.44989 | T | C | LOC101794856 | |
| chr3 | 39517020 | 9.794113 | A | G | LOC101795266 | |
| chr3 | 54977399 | 10.88282 | C | T | ARID1B | |
| chr3 | 56297389 | 10.91372 | C | T | AIG1 | |
| chr4 | 16056736 | 8.885082 | T | C | PURG | |
| TCA | chr11 | 19801194 | 9.981866 | G | A | INTS14 |
| chr11 | 19843385 | 9.511955 | C | T | HACD3 | |
| chr11 | 19791413 | 8.619472 | G | A | DENND4A | |
| LCL | chr1 | 204456821 | 8.877868 | G | A | GUCY2F |
| chr1 | 204456829 | 8.858735 | A | G | GUCY2F | |
| chr1 | 204456818 | 8.714282 | G | A | GUCY2F | |
| chr8 | 7523520 | 8.704662 | T | A | KCNT2 | |
| RCL | chr20 | 7466942 | 8.96404 | T | C | MYL10 |
| chr11 | 19969233 | 8.951823 | T | C | MEGF11 | |
| chr1 | 204456818 | 8.719696 | G | A | GUCY2F |
Chr = chromosome, p = probability of main effect, REF = the base of the reference genome, ALT = the mutated base, RCA = right color area, TCA = total color area, LCL = left color length, RCL = right color length.