Table 3.
The top significant SNPs identified in the ventral feather color traits.
| Trait | Chr | Pos | −Log10(p) | REF | ALT | Gene |
|---|---|---|---|---|---|---|
| LCA | chr5 | 30633861 | 10.94515 | G | A | CCDC86 |
| chr11 | 9151176 | 10.9137 | G | A | LOC119718058 | |
| chr3 | 7298398 | 10.51952 | G | A | MACROD2 | |
| chr6 | 817341 | 8.982077 | T | G | PRKG1 | |
| RCA | chr1 | 140523618 | 9.463266 | A | G | - |
| chr13 | 15682406 | 8.862459 | T | C | LOC113845051 | |
| chr3 | 7616580 | 8.693525 | T | C | MACROD2 | |
| chr6 | 3619856 | 8.638454 | C | G | LOC101796401 | |
| TCA | chr6 | 3619856 | 9.240001 | C | G | LOC101796401 |
| chr5 | 30633861 | 9.162349 | G | A | CCDC86 | |
| chr3 | 7616580 | 9.131946 | T | C | MACROD2 |
Chr = chromosome, p = probability of main effect, REF = the base of the reference genome, ALT = the mutated base, LCA = left color area, RCA = right color area, TCA = total color area.