CREs	Cis-regulatory elements
EPs	Enhancers and promoters
TF	Transcription factors
TAD	Topologically associated structural domain
Pol II	RNA polymerase II
Ser5P	Ser5-phosphorylated Pol II
Co	Cofactor
TSS	Translation start site
PIC	Pre-initiation complex
GTF	General transcription factor
BRE	TFIIB recognition element
INR	Initiator
DPE	Downstream promoter element
PROMPTs	Upstream promoter transcripts
UaRNA	Upstream antisense RNA
H3K27ac	Acetylation of lysine 27 on histone H3
H3K4me1	Mono-methylation of lysine 4 on histone H3
H3K4me3	Trimethylation of lysine 4 on histone H3
ChIP	Chromatin immunoprecipitation
CTCF	CCCTC-binding factor
YY1	Transcription factor Yin Yang 1
CA	Chromatin accessibility
sgRNA	Single guide RNA
3C	Chromatin conformation capture
FISH	Fluorescence in situ hybridization
PTE	Promoter tethering element
TAF4	TFIID subunit TBP-associated factor 4
Cryo-EM	Cryo-electron microscopy
PTM	Post-translational modifications
Enh13	Enhancer 13
HARs	Human accelerated regions
HsSVS	Human-specific structural variants
eccDNA	Extrachromosomal circular DNA
TEs	Transposable elements