TABLE 3.
Conditional probability of detecting taxa in 16S amplicon-method samples c
| Amplicon genus | P (vaginal|urine) a | P (urine|vaginal) b |
|---|---|---|
| Acidovorax | 0.056 | 0.200 |
| Acinetobacter | 0.000 | 0.000 |
| Actinotignum | 0.077 | 0.333 |
| Aerococcus | 0.444 | 0.571 |
| Alloscardovia | 0.167 | 1.000 |
| Anaerococcus | 0.548 | 0.654 |
| Aquirufa | 0.185 | 0.455 |
| Arcanobacterium | 0.500 | 0.667 |
| Atopobium | 0.083 | 0.167 |
| Bifidobacterium | 0.278 | 0.227 |
| Brevibacterium | 0.200 | 0.167 |
| Campylobacter | 0.160 | 0.444 |
| Comamonas | 0.105 | 0.667 |
| Corynebacterium | 0.727 | 0.800 |
| Curvibacter | 0.063 | 0.333 |
| Dialister | 0.423 | 0.579 |
| Enterococcus | 0.133 | 0.333 |
| Escherichia | 0.706 | 0.828 |
| Ezakiella | 0.417 | 0.455 |
| Facklamia | 0.059 | 0.143 |
| Fannyhessea | 0.500 | 0.500 |
| Fenollaria | 0.381 | 0.571 |
| Finegoldia | 0.594 | 0.792 |
| Flavobacterium | 0.818 | 0.871 |
| Fluviicola | 0.091 | 0.500 |
| Fusobacterium | 0.154 | 0.286 |
| Gardnerella | 0.563 | 0.643 |
| Gemella | 0.625 | 0.500 |
| Haemophilus | 0.333 | 0.400 |
| Howardella | 0.286 | 0.500 |
| Hydrotalea | 0.111 | 0.375 |
| Jonquetella | 0.167 | 0.250 |
| Klebsiella | 0.563 | 0.750 |
| Lacticaseibacillus | 1.000 | 1.000 |
| Lactobacillus | 1.000 | 1.000 |
| Lawsonella | 0.208 | 0.500 |
| Leucobacter | 0.000 | Urine only |
| Levyella | 0.083 | 0.250 |
| Limosilactobacillus | 0.923 | 0.923 |
| Mageeibacillus | 0.750 | 1.000 |
| Megasphaera | 0.500 | 0.500 |
| Mobiluncus | 0.467 | 0.636 |
| Mycoplasma | 1.000 | 0.714 |
| Parvibacter | 0.833 | 0.833 |
| Parvimonas | 0.625 | 0.556 |
| Pauljensenia | 1.000 | 1.000 |
| Peptoniphilus | 0.767 | 0.793 |
| Peptostreptococcus | 0.267 | 0.571 |
| Phenylobacterium | 0.074 | 0.333 |
| Polynucleobacter | 0.125 | 0.500 |
| Porphyromonas | 0.250 | 0.313 |
| Prevotella | 0.727 | 0.828 |
| Pseudoglutamicibacter | 0.000 | 0.000 |
| Pseudomonas | 0.056 | 0.500 |
| Rhodoluna | 0.222 | 0.667 |
| Shigella | 0.200 | 0.500 |
| Sneathia | 0.500 | 0.455 |
| Staphylococcus | 0.576 | 0.864 |
| Streptococcus | 0.273 | 0.500 |
| Unknown | 0.742 | 0.821 |
| Ureaplasma | 0.583 | 0.583 |
| Varibaculum | 0.208 | 0.313 |
| Veillonella | 0.250 | 0.250 |
| Winkia | 0.250 | 0.417 |
a
The probability that genera will be detected in the vaginal swab if it is detected in the urine sample.
b
The probability that genera will be detected in the urine sample swab if it is detected in the vaginal swab.
c
Bold values are greater than 0.75.