TABLE 1.

Genes significantly differentially expressed in K. pneumoniae ΔompR compared with WT, when co-incubated with a monolayer of human A549 lung epithelial cells ^a

Gene or locus tag	log2FC	Adjusted P-value	(Predicted) function
mpR	−6.827565916	7.00509E−86	Two-component system response regulator
mpK35	−3.259249606	1.68898E−34	Porin
dtpA	−2.321517549	2.97161E−16	Dipeptide/tripeptide permease
mpC	−1.757216339	0.000000947174	Porin
IT767_03325	−1.621397713	0.000015452404	Non-heme ferritin-like protein
IT767_02620	−1.511025745	0.000015452404	DNA-binding response regulator
mrkA	−1.491525118	0.00176437549	Type 3 fimbria major subunit
ilvC	−1.389780828	0.00546572241	Ketol-acid reductoisomerase
IT767_02625	−1.380606427	0.000503848469	DMT family transporter
rpsP	−1.3772856	0.0263555292	30S ribosomal protein S16
IT767_15995	−1.342613157	0.0436857435	tRNA-Leu
deaD	−1.31497228	0.0231368979	ATP-dependent RNA helicase
ychH	1.271180794	0.0253742485	Stress-induced protein
lldP	1.290650902	0.0264506555	L-Lactate permease
IT767_20215	1.336512105	0.0170453364	Aquaporin
araC	1.352973572	0.0170453364	Arabinose operon transcriptional regulator
IT767_11875	1.456031162	0.0180202346	YbgS-like family protein
csiE	1.479682873	0.00580507439	Stationary phase-inducible protein
raiA	1.611844528	0.000497823148	Ribosome-associated translation inhibitor
cspD	1.622883409	0.00278980858	Cold shock-like protein
phoH	1.648602795	0.00158781766	Phosphate starvation-inducible protein
mglB	1.837292397	0.000005778769	Galactose/glucose ABC transporter substrate-binding protein
IT767_08965	2.591391864	1.07569E−14	YmiA family putative membrane protein

^a Genes that are significantly differentially expressed (having an absolute log₂FoldChange (log₂FC) > log₂(1.5) and an adjusted P < 0.05) in the ΔompR strain compared with the WT strain. For each gene, the function, the adjusted P-value, and log₂FoldChange are given. For genes that have not been named, the predicted function (as per the published annotation) is given.