Biological samples |
|
RNAlater™ Stabilization Solution
|
Fischer Scientific |
Cat# AM7020 |
OMNIgeneGUT |
DNAgenotek |
Cat# OMR-200 |
Vacutainer® EDTA Tubes |
BD |
Cat# 366643 |
Vacutainer® SST™ Tubes |
BD |
Cat# 367988 |
Lactate Plus Meter Test Strips |
Nova Biomedical |
Cat# 40813 |
|
Critical commercial assays |
|
Complete Blood Count (including Differential and Platelets) |
Quest Diagnostics |
Test Code 6399 |
Comprehensive Metabolic Panel |
Quest Diagnostics |
Test Code 10231 |
DNeasy PowerSoil Pro Kit |
Qiagen |
Cat# 47014 |
Quant-iT™ PicoGreen™ dsDNA Assay Kits and dsDNA Reagents |
Thermo Fisher |
Cat# P7589 |
|
Software and algorithms |
|
OWUS-4.3 Windows O2 Uptake Software |
Parvo Medics |
https://www.parvo.com/trueone-2400/ |
Automated Self-Administered Dietary Assessment Tool (ASA24) |
NIH |
https://asa24.nci.nih.gov/ |
MetaPhlAn2 |
PMID: 26418763
|
https://github.com/biobakery/MetaPhlAn2 |
HUMAn2 |
PMID: 30377376
|
https://github.com/biobakery/humann |
MetaKey |
ProDigests |
https://prodigest.eu/metakey/ |
Xcalibur Software v4.0.27.21 |
Thermo Fisher |
https://www.thermofisher.com/us/en/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-software/lc-ms-data-acquisition-software/xcalibur-data-acquisition-interpretation-software.html |
SIMCA® v17 |
Sartorius |
https://sartorius.com/en/products/process-analytical-technology/data-analytics-software/mvda-software/simca |
QIIME2 |
https://qiime2.org |
RRID:SCR_021258
|
SPSS v27 |
IBM |
https://www.ibm.com/spss?lnk=flatitem |
GraphPad Prism |
Dotamatics |
https://www.graphpad.com/features |
|
Other |
|
Informed consent was obtained from all subjects involved in the study. The study was conducted in accordance with the Declaration of Helsinki, and approved by the Institutional Review Board of Lindenwood University. |
Lindenwood University & Declaration of Helsinki |
Protocol #22–60, approval date: 1/4/22. |
Woodway Desmo-Evo Treadmill |
Woodway |
https://www.woodway.com/home-page/ |
Polar H10 |
Polar USA |
https://www.polar.com/us-en/sensors/h10-heart-rate-sensor |
TrueOne 2400 Metabolic Cart |
Parvo Medics |
https://www.parvo.com/trueone-2400/ |
InBody 570 |
InBody |
https://inbodyusa.com/products/inbody570/ |
Lactate Plus Meter |
Nova Biomedical |
62624 |
NovaSeq 6000 |
Illumina |
6000 |
Vanquish Quaternary Pumping System |
Thermo Fisher |
VF-P20-A |
Q-Exactive™ Quadrupole-Orbitrap High-Resolution Mass Spectrometer |
Thermo Fisher |
IQLAAEGAAPFALGMBDK |
Fecal metagenomic sequence data |
Sequence Read Archive (SRA) https://www.ncbi.nlm.nih.gov/sra/
|
PRJNA103161 |