Table 1.
Candidate genes used in this study
| Drug | Abbrev. | Candidate genes |
|---|---|---|
| Isoniazid | INH | katG, fabG1, inhA, ahpC, ndh, kasA, Rv1258c, Rv2752c |
| Ethionamide | ETH | ethA, ethR, fabG1, inhA, mshA, Rv3083, Rv0565c |
| Rifampicin | RIF | rpoA, rpoB, rpoC, rpoZ, Rv2752c |
| Rifabutin | RFB | rpoA, rpoB, rpoC, rpoZ, Rv2752c |
| Ethambutol | EMB | embA, embB, embC, embR, rmlD, iniA, iniC, manB, ubiA |
| Amikacin | AMI | rrs, eis, ccsA, whiB6, whiB7, aftB, fprA |
| Kanamycin | KAN | rrs, eis, ccsA, whiB6, whiB7, aftB, fprA |
| Levofloxacin | LEV | gyrA, gyrB |
| Moxifloxacin | MXF | gyrA, gyrB |
| Bedaquiline | BDQ | atpE, Rv0678, mmpL5, mmpS5, pepQ, Rv3249c |
| Clofazimine | CFZ | Rv1979c, pepQ, Rv0678, mmpL5, mmpS5, Rv3249c |
| Linezolid | LZD | rplC, rrl, Rv3249c |
| Delamanid | DLM | ddn, fgd1, fbiA, fbiB, fbiC, fbiD, Rv3249c |