Figure 6.

Haplotype comparison of diploid sika deer

A. Correlation heatmap of transcriptome data in Hap1. EP indicates the stage of antler growing to a saddle-like appearance; MP indicats the stage of antler growing with two branches; LP indicates the stage of antler growing with three branches. B. PCA of allele expression profiles of sika deer antler at three developmental periods. C. Comparison of two haplotypes using 10-Mb nonoverlapping windows. D. Statistics of alleles. E. Distribution histogram of alleles on the chromosomes. F. Distribution histogram of SVs between haplotypes on chromosomes. G. Statistics of SVs between two haplotypes. PCA, principal component analysis; PC, principal component; SV, structural variation.