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. 2023 Dec 27;67(1):152–164. doi: 10.1021/acs.jmedchem.3c01020

Table 2. Recognized Bacterial and Fungal Endosymbionts in AK According to Horn, Wagner,37 Barker, Brown,38 and Rayamajhee et al.31a.

organism phylum detected in AK strains count all CA count unique CA count
<>Achromobacter<> sp Proteobacteria yesc 20 40 7
<>Agrobacterium tumefaciens<> Proteobacteria   6 19 3
<>Afipia felis<> Proteobacteria   1 4 3
<>Brevibacillus<> sp Firmicutes yesc 24 25 6
<>Brevundimonas vesicularis<> Proteobacteria yesc 1 6 3
<>Burkholderia cepacia<> Proteobacteria   4 31 6
<>Burkholderia pickettii<> Proteobacteria   4 21 5
<>Burkholderia pseudomallei<> Proteobacteria   15 39 3
<>Caedibacter<> Proteobacteria   3 4 4
<>Amoebophilus asiaticus<> Bacteroidetes yesg 0 0 0
Candidatus Babela massiliensis Candidatus Dependentiae yesh 0 0 0
Candidatus Caedibacter acanthamoebae Proteobacteria   1 1 1
<>Candidatus Odyssella<> Proteobacteria   1 3 3
<>Candidatus Paracaedibacter<> spp Proteobacteria yesb,e 1 1 1
<>Candidatus Procabacter<> Proteobacteria   0 0 0
Candidatus Protochlamydia amoebophila Chlamydiae   1 2 2
<>Chlamydia trachomatis<> Chlamydiae yesd,f 0 0 0
<>Chlamydophila pneumoniae<> Chlamydiae   0 0 0
<>Coxiella burnetii<> Proteobacteria   3 4 2
<>Cytophaga<> spp Bacteroidetes   4 11 6
<>Escherichia coli<> Proteobacteria yesc 4 35 4
<>Francisella tularensis<> Proteobacteria   6 15 2
<>Helicobacter pylori<> Campylobacterota   3 48 2
<>Legionella cherrii<> Proteobacteria yesf 1 3 3
<>Legionella dumoffii<> Proteobacteria yesf 0 0 0
<>Legionella lytica<> Proteobacteria yesf 0 0 0
<>Legionella pneumophila<> Proteobacteria yesd,f 4 27 5
<>Listeria monocytogenes<> Firmicutes   8 23 2
<>Methylophilus<> spp Proteobacteria   5 12 5
<>Microbacterium<> sp Actinobacteria yesc 35 50 26
<>Mobiluncus curtisii<> Actinobacteria   3 3 1
<>Mycobacterium avium<> Actinobacteria yesd,f 16 23 5
<>Mycobacterium bovis<> Actinobacteria yesd,f 2 7 3
<>Mycobacterium tuberculosis<> Actinobacteria yesd,f 20 47 5
<>Neochlamydia<> Chlamydiae   3 3 1
<>Parachlamydia acanthamoebae<> Chlamydiae yese 2 2 1
<>Pseudomonas aeruginosa<> Proteobacteria yesc,d,f 3 29 3
<>Stenotrophomonas geniculata<> Proteobacteria yesf 1 2 2
<>Rickettsia<> Proteobacteria yesd 23 25 4
<>Salmonella enterica<> Proteobacteria   31 33 2
<>Simkania negevensis<> Chlamydiae   1 1 1
<>Stenotrophomonas maltophilia<> Proteobacteria yesc 4 25 1
<>Vibrio cholerae<> Proteobacteria   9 29 2
<>Waddlia chondrophila<> Chlamydiae   2 2 1
<>Blastomyces dermatitidis<> Ascomycota   4 11 3
<>Cryptococcus neoformans<> Basidiomycota yesd 6 12 2
<>Histoplasma capsulatum<> Ascomycota   5 25 7
<>Sporothrix schenckii<> Ascomycota   2 12 6
a

“Strains count”—number of unique strains or subspecies found for the target organism. “All CA count”—number of unique CA proteins for that organism (possessing a UniPROT protein ID). “Unique CA count”—from the “All CA count” proteins, how many are left after reducing to a max 80% similarity.

b

Refrence (39).

c

Reference (40).

d

Reference (30).

e

Reference (41).

f

Reference (32).

g

Reference (42).

h

Reference (43).