Antibodies |
Mouse anti-Aggrecan |
Thermofisher |
MA3-16888 |
Rabbit ant-βcatenin |
Abcam |
ab6302 |
Rabbit ant-βgalactosidase |
MBL Life Science |
PM049 |
Mouse anti-Collagen 2A1 |
Millipore |
MAB8887 |
Rabbit anti-Osteocalcin |
EMD Millipore |
ab10911 |
Goat anti-Periostin |
R&D Systems |
af2955 |
Rabbit anti-Runx2 |
Abcam |
ab23981 |
Rabbit anti-total βcatenin |
Invitrogen |
71-2700 |
Rabbit anti-non-phospho (active)-βcatein |
Cell Signaling |
8814 |
Rabbit anti-LRP5 |
Proteintech |
24899-1-AP |
Rabbit anti-LRP6 |
Cell Signaling |
3395 |
Mouse anti-CD44 |
Proteintech |
60224-1 |
Mouse anti-GAPH |
Invitrogen |
MA116757 |
Goat anti-mouse HRP |
Invitrogen |
G21040 |
Goat anti-rabbit HRP |
Invitrogen |
G21234 |
Goat anti-rabbit Alexa Fluor 546 |
Invitrogen |
A11010 |
Goat anti-rabbit Alexa Fluor 488 |
Invitrogen |
A11008 |
Goat anti-mouse Alexa Fluor 546 |
Invitrogen |
A11003 |
Goat anti-mouse Alexa Fluor 488 |
Invitrogen |
A11001 |
Donkey anti- rabbit Alexa Fluor 647 |
Invitrogen |
A32795 |
Chemicals, peptides, and recombinant proteins |
Recombinant Human Protein Sclerostin Protein |
R&D Systems |
1406-ST-025/CF |
Sodium Hyaluronate |
Lifecore Biomedical |
HA2M-5 |
Recombinant Human Wnt3A Protein |
R&D Systems |
5036-WN-010/CF |
Recombinant Human Dickkopf Related 3 Protein |
R&D Systems |
1118-DK-050/CF |
Wnt-C59 |
Peprotech |
1248913 |
Critical commercial assays |
Porcine Dickkopf Related Protein 3 ELISA Kit |
Mybioscience |
MBS099882 |
Sclerostin Human ELISA Kit |
Invitrogen |
EHSOST |
Invitrogen™ Click-iT™ Plus EdU Cell Proliferation Kit for Imaging |
Invitrogen |
C10639 |
SYBR™ Green PCR Master Mix |
ThermoFisher |
4309155 |
RNAscope™ Multiplex Fluorescent Reagent Kit v2 |
Advanced Cell Diagnostics |
323100 |
RNAscope™ 2.5 HD Duplex Detection Reagents |
Advanced Cell Diagnostics |
322500 |
Deposited data |
Raw and analyzed data |
This paper |
GEO: GSE236909
|
Experimental models: Primary Cell lines |
1-Human Perichondrial Cells Lgr5High
|
Embree Lab, this paper |
N/A |
OA 2-Human Perichondrial Cells Lgr5Low
|
Embree Lab, this paper |
N/A |
OA 3-Human Perichondrial Cells Lgr5Low
|
Embree Lab, this paper |
N/A |
OA 4-Human Perichondrial Cells Lgr5Low
|
Embree Lab, this paper |
N/A |
Healthy Human Mandibular Condylar Chondrocytes |
Embree Lab, this paper |
N/A |
Osteoarthrithic Human Mandibular Condylar Chondrocytes |
Embree Lab, this paper |
N/A |
Mini-pig mandibular condylar chondrocytes |
Embree Lab, this paper |
N/A |
Mini-pig perichondrial cells |
Embree Lab, this paper |
N/A |
Experimental models: Organisms/strains |
Mouse: prg4tm1Mawa/J
|
Jackson Laboratory |
025737 |
Mouse: Tg (TCF/Lef1-lacZ)34Efu/J |
Jackson Laboratory |
004623 |
Mouse: Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J |
Jackson Laboratory |
007909 |
Mouse: Lgr5tm1(cre/ERT2)Cle/J
|
Jackson Laboratory |
008874 |
Mouse: CD1-IGS |
Charles River |
022 |
Mouse: Lgr5DTR-EGFP
|
Genetech |
N/A |
Rat: Sprague Dawley |
Charles River |
400 |
Rabbit: New Zealand White |
Charles River |
052 |
Pig: Yucatan Miniature Swine |
Sinclair Bioresources |
N/A |
Oligonucleotides |
Primers for qRT-PCR, see Table S5
|
This paper |
N/A |
Primers for genotyping, see Table S2
|
This paper |
N/A |
Software and algorithms |
Prism Graphpad |
N/A |
https://www.graphpad.com
|
ImageJ |
Schneider et al. 2012 |
https://imagej.nih.gov/ij/
|
Biorender
|
N/A
|
https://www.biorender.com
|
StringTie software |
Kovaka et al. 2019 |
https://ccb.jhu.edu/software/stringtie/
|
RUVSeq software |
Risso et al. 2014 |
https://bioconductor.org/packages/release/bioc/html/RUVSeq.html
|
SQANTI3 software |
Tardgauila et al. 2018 |
https://github.com/ConesaLab/SQANTI3
|
IsoformSwitchAnalyzeR software |
Vitting-Seerup et al. 2019 |
https://bioconductor.org/packages/release/bioc/html/IsoformSwitchAnalyzeR.html
|
DESeq2 software |
Love et al. 2014 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html
|
clusterProfiler 4.0 software |
Wu et al. 2021 |
https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
|
Salmon aligner |
Patro et al. 2017 |
https://combinelab.github.io/salmon/
|
STAR aligner |
Dobin et al. 2013 |
https://github.com/alexdobin/STAR/tree/master
|