Skip to main content
. Author manuscript; available in PMC: 2024 Sep 7.
Published in final edited form as: Cell Stem Cell. 2023 Sep 7;30(9):1179–1198.e7. doi: 10.1016/j.stem.2023.08.004

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Mouse anti-Aggrecan Thermofisher MA3-16888
Rabbit ant-βcatenin Abcam ab6302
Rabbit ant-βgalactosidase MBL Life Science PM049
Mouse anti-Collagen 2A1 Millipore MAB8887
Rabbit anti-Osteocalcin EMD Millipore ab10911
Goat anti-Periostin R&D Systems af2955
Rabbit anti-Runx2 Abcam ab23981
Rabbit anti-total βcatenin Invitrogen 71-2700
Rabbit anti-non-phospho (active)-βcatein Cell Signaling 8814
Rabbit anti-LRP5 Proteintech 24899-1-AP
Rabbit anti-LRP6 Cell Signaling 3395
Mouse anti-CD44 Proteintech 60224-1
Mouse anti-GAPH Invitrogen MA116757
Goat anti-mouse HRP Invitrogen G21040
Goat anti-rabbit HRP Invitrogen G21234
Goat anti-rabbit Alexa Fluor 546 Invitrogen A11010
Goat anti-rabbit Alexa Fluor 488 Invitrogen A11008
Goat anti-mouse Alexa Fluor 546 Invitrogen A11003
Goat anti-mouse Alexa Fluor 488 Invitrogen A11001
Donkey anti- rabbit Alexa Fluor 647 Invitrogen A32795
Chemicals, peptides, and recombinant proteins
Recombinant Human Protein Sclerostin Protein R&D Systems 1406-ST-025/CF
Sodium Hyaluronate Lifecore Biomedical HA2M-5
Recombinant Human Wnt3A Protein R&D Systems 5036-WN-010/CF
Recombinant Human Dickkopf Related 3 Protein R&D Systems 1118-DK-050/CF
Wnt-C59 Peprotech 1248913
Critical commercial assays
Porcine Dickkopf Related Protein 3 ELISA Kit Mybioscience MBS099882
Sclerostin Human ELISA Kit Invitrogen EHSOST
Invitrogen Click-iT Plus EdU Cell Proliferation Kit for Imaging Invitrogen C10639
SYBR Green PCR Master Mix ThermoFisher 4309155
RNAscope Multiplex Fluorescent Reagent Kit v2 Advanced Cell Diagnostics 323100
RNAscope 2.5 HD Duplex Detection Reagents Advanced Cell Diagnostics 322500
Deposited data
Raw and analyzed data This paper GEO: GSE236909
Experimental models: Primary Cell lines
1-Human Perichondrial Cells Lgr5High Embree Lab, this paper N/A
OA 2-Human Perichondrial Cells Lgr5Low Embree Lab, this paper N/A
OA 3-Human Perichondrial Cells Lgr5Low Embree Lab, this paper N/A
OA 4-Human Perichondrial Cells Lgr5Low Embree Lab, this paper N/A
Healthy Human Mandibular Condylar Chondrocytes Embree Lab, this paper N/A
Osteoarthrithic Human Mandibular Condylar Chondrocytes Embree Lab, this paper N/A
Mini-pig mandibular condylar chondrocytes Embree Lab, this paper N/A
Mini-pig perichondrial cells Embree Lab, this paper N/A
Experimental models: Organisms/strains
Mouse: prg4tm1Mawa/J Jackson Laboratory 025737
Mouse: Tg (TCF/Lef1-lacZ)34Efu/J Jackson Laboratory 004623
Mouse: Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J Jackson Laboratory 007909
Mouse: Lgr5tm1(cre/ERT2)Cle/J Jackson Laboratory 008874
Mouse: CD1-IGS Charles River 022
Mouse: Lgr5DTR-EGFP Genetech N/A
Rat: Sprague Dawley Charles River 400
Rabbit: New Zealand White Charles River 052
Pig: Yucatan Miniature Swine Sinclair Bioresources N/A
Oligonucleotides
Primers for qRT-PCR, see Table S5 This paper N/A
Primers for genotyping, see Table S2 This paper N/A
Software and algorithms
Prism Graphpad N/A https://www.graphpad.com
ImageJ Schneider et al. 2012 https://imagej.nih.gov/ij/
Biorender N/A https://www.biorender.com
StringTie software Kovaka et al. 2019 https://ccb.jhu.edu/software/stringtie/
RUVSeq software Risso et al. 2014 https://bioconductor.org/packages/release/bioc/html/RUVSeq.html
SQANTI3 software Tardgauila et al. 2018 https://github.com/ConesaLab/SQANTI3
IsoformSwitchAnalyzeR software Vitting-Seerup et al. 2019 https://bioconductor.org/packages/release/bioc/html/IsoformSwitchAnalyzeR.html
DESeq2 software Love et al. 2014 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
clusterProfiler 4.0 software Wu et al. 2021 https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
Salmon aligner Patro et al. 2017 https://combinelab.github.io/salmon/
STAR aligner Dobin et al. 2013 https://github.com/alexdobin/STAR/tree/master