TABLE 2.
Prediction of key amino acid residues during the docking of XaffOBP9 to different ligands.
| No. | Ligand | Binding energy | Hydrophobic interactions | Van der Waals interactions | H-Bond |
|---|---|---|---|---|---|
| 1 | 2-Phenyl-2-propanol | −6.5 | Phe103 Phe55 | Ile48 Met49 Ile53 Tyr106 Leu114 Val116 | Tyr46 Ser50 |
| 2 | Myrcene | −4.0 | Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 | Ile10 Val67 His113 | |
| 3 | Terpinolene | −6.9 | Met 49 Phe55 Val67 Lys70 Lys71 Leu71 Tyr106 Leu114 Ser50 | ||
| 4 | (S)-cis-Verbenol | −5.0 | Lys15 Val18 Pro25 Ile28 Phe117 | Ser19 | |
| 5 | Camphene | −6.9 | Phe55 Val67 Lys70 Leu71 Ala74 Tyr106 Leu114 | Leu2 Phe103 | |
| His113 | |||||
| 6 | ɑ-Pinene | −6.7 | Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 | Val67 His113 | |
| 7 | 3-Carene | −6.6 | Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 | Val67 His113 | |
| 8 | ɑ-Copaene | −6.8 | Leu2 Ile10 Met49 Ile53 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 | His113 Thr115 | |
| Val116 | |||||
| 9 | (+)-Longifolene | −5.5 | Phe55 Val67 Lys70 Leu71 Ala74 Phe103 Tyr106 His113 Leu114 | Leu2 Ile10 | |
| Ile53 | |||||
| 10 | Sabinene | −6.5 | Phe55 Val67 Lys70 Leu71 Phe103 Tyr106 Leu114 | His113 Thr115 | |
| 11 | (-)-β-Pinene | −6.6 | Phe55 Lys70 Leu71 Ala74 Tyr106 Leu114 | Phe103 Leu2 Val67 His113 | |
| 12 | Tetradecane | −3.0 | Leu11 Cys17 | Lys9 Ala12 Lys15 Ala16 Lys52 Ile53 Thy115 Val116 Phe117 | |
| 13 | m-Cymene | −6.7 | Met49 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 | Ser50 | |
| 14 | (S)- (-)-Limonene | −6.7 | Met49 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 | Ser50 |
Note: Key residues (overstriking) that bound to more than one ligand was selected as the object of subsequent site-directed mutation analysis.