Skip to main content
. 2024 Jan 3;14:1326099. doi: 10.3389/fphys.2023.1326099

TABLE 2.

Prediction of key amino acid residues during the docking of XaffOBP9 to different ligands.

No. Ligand Binding energy Hydrophobic interactions Van der Waals interactions H-Bond
1 2-Phenyl-2-propanol −6.5 Phe103 Phe55 Ile48 Met49 Ile53 Tyr106 Leu114 Val116 Tyr46 Ser50
2 Myrcene −4.0 Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 Ile10 Val67 His113
3 Terpinolene −6.9 Met 49 Phe55 Val67 Lys70 Lys71 Leu71 Tyr106 Leu114 Ser50
4 (S)-cis-Verbenol −5.0 Lys15 Val18 Pro25 Ile28 Phe117 Ser19
5 Camphene −6.9 Phe55 Val67 Lys70 Leu71 Ala74 Tyr106 Leu114 Leu2 Phe103
His113
6 ɑ-Pinene −6.7 Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 Val67 His113
7 3-Carene −6.6 Leu2 Phe55 Lys70 Leu71 Ala74 Phe103 Tyr106 Leu114 Val67 His113
8 ɑ-Copaene −6.8 Leu2 Ile10 Met49 Ile53 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 His113 Thr115
Val116
9 (+)-Longifolene −5.5 Phe55 Val67 Lys70 Leu71 Ala74 Phe103 Tyr106 His113 Leu114 Leu2 Ile10
Ile53
10 Sabinene −6.5 Phe55 Val67 Lys70 Leu71 Phe103 Tyr106 Leu114 His113 Thr115
11 (-)-β-Pinene −6.6 Phe55 Lys70 Leu71 Ala74 Tyr106 Leu114 Phe103 Leu2 Val67 His113
12 Tetradecane −3.0 Leu11 Cys17 Lys9 Ala12 Lys15 Ala16 Lys52 Ile53 Thy115 Val116 Phe117
13 m-Cymene −6.7 Met49 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 Ser50
14 (S)- (-)-Limonene −6.7 Met49 Phe55 Val67 Leu71 Phe103 Tyr106 Leu114 Ser50

Note: Key residues (overstriking) that bound to more than one ligand was selected as the object of subsequent site-directed mutation analysis.